Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019051.1 Corchorus olitorius cultivar O-4 contig19084, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44679

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4549--4620
27
2.7
27
86
0
90
40
26
16
16
1.90
5551--5622
17
4.4
16
79
13
76
41
6
2
48
1.44
5552--5616
31
2.1
31
94
0
112
41
7
3
47
1.48
5552--5598
14
3.1
15
81
12
51
42
8
4
44
1.54
9195--9223
2
14.5
2
100
0
58
51
0
0
48
1.00
9841--9873
11
2.9
12
86
13
52
21
0
6
72
1.05
9887--9921
18
1.9
18
88
0
52
40
28
0
31
1.57
11817--11886
29
2.4
29
85
4
88
21
17
14
47
1.82
12185--12265
26
3.1
26
96
0
144
61
0
1
37
1.04
12208--12276
21
3.5
19
75
15
52
66
0
1
31
1.00
15422--15459
15
2.5
15
87
8
51
63
7
13
15
1.51
16852--16884
2
16.5
2
93
0
57
51
0
0
48
1.00
28275--28299
11
2.3
11
100
0
50
32
0
0
68
0.90
31527--31606
32
2.5
32
84
6
101
27
28
10
33
1.89
31610--31688
28
2.7
28
79
15
79
29
11
29
30
1.92
36489--36667
90
2.0
87
93
3
304
31
21
19
27
1.97
37214--37250
16
2.2
17
95
4
67
67
8
18
5
1.36
42015--42058
21
2.0
22
86
4
63
18
43
2
36
1.63
44595--44674
29
2.8
29
90
0
124
41
25
18
15
1.89

Tables:   1

The End!