Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019052.1 Corchorus olitorius cultivar O-4 contig19085, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43573

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
416--718
29
10.4
29
82
1
345
40
22
18
18
1.91
951--1476
58
8.9
58
88
3
685
41
15
17
26
1.88
2311--2392
38
2.1
40
86
8
116
9
20
10
58
1.60
2850--2929
29
2.8
28
84
7
99
18
15
27
38
1.91
3487--3571
42
2.0
42
97
0
161
49
12
7
30
1.68
19228--19269
13
3.3
12
86
6
57
38
0
7
54
1.28
23572--23605
15
2.3
15
94
0
59
26
5
8
58
1.51
31263--31319
29
2.0
29
82
6
71
43
5
12
38
1.65
33833--33875
22
2.0
22
85
0
59
27
34
20
16
1.94
33692--33862
71
2.4
71
98
0
326
31
25
23
19
1.98
34511--34541
15
2.1
15
93
0
53
83
0
0
16
0.64
35008--35049
21
2.0
21
95
0
75
21
42
26
9
1.83
35082--35122
21
2.0
21
95
0
73
21
46
21
9
1.80
38550--38578
2
14.5
2
100
0
58
48
0
0
51
1.00

Tables:   1

The End!