Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019053.1 Corchorus olitorius cultivar O-4 contig19086, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70917

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
354--624
133
2.0
133
98
0
524
38
10
22
28
1.87
5996--6028
13
2.6
13
85
4
50
6
6
12
75
1.16
7455--7748
29
10.2
29
81
2
326
18
19
22
39
1.92
9645--9670
12
2.2
12
100
0
52
19
7
19
53
1.68
12232--12267
14
2.6
14
95
0
63
27
16
5
50
1.68
24175--24246
35
2.1
35
100
0
144
29
15
11
44
1.80
26278--26417
72
1.9
72
83
11
178
37
11
18
32
1.87
27254--27325
5
13.6
5
76
13
56
65
16
1
16
1.35
27253--27325
10
6.8
11
70
17
64
65
16
1
16
1.34
27914--28011
50
2.0
50
83
0
124
33
20
15
30
1.93
28340--28405
25
2.5
28
80
14
86
53
16
22
7
1.68
28612--28832
50
4.4
50
97
0
415
29
28
14
27
1.95
28861--29067
50
4.1
50
93
1
360
32
12
28
26
1.92
28861--29067
101
2.1
100
94
0
360
32
12
28
26
1.92
29334--29413
29
2.9
28
81
10
101
23
12
22
41
1.88
34073--34112
15
2.6
16
88
4
55
15
10
12
62
1.54
34298--34339
21
2.0
22
85
4
59
21
28
14
35
1.92
36419--36464
19
2.4
19
85
7
58
82
0
13
4
0.81
37505--37606
50
2.0
50
83
3
125
28
18
15
37
1.92
38294--38511
87
2.5
87
91
1
357
33
19
13
33
1.91
38598--38766
69
2.4
69
92
0
275
25
28
14
31
1.95
38765--38954
91
2.1
91
90
2
292
26
17
25
30
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51005--51069
29
2.2
29
83
2
76
53
21
7
16
1.68
55436--55464
14
2.0
15
93
6
51
62
13
0
24
1.32
57792--57833
22
1.9
22
90
0
66
42
14
21
21
1.88
58600--58624
10
2.5
10
100
0
50
56
8
0
36
1.29
62908--62947
19
2.1
19
90
0
62
17
37
12
32
1.87
68654--68798
72
2.0
72
89
2
220
24
11
26
37
1.90

Tables:   1

The End!