Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019054.1 Corchorus olitorius cultivar O-4 contig19087, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 966

Length: 1610
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32


Found at i:764 original size:19 final size:21

Alignment explanation


    Indices: 723--764  Score: 52
    Period size: 22  Copynumber: 2.0  Consensus size: 21

        713 AAATATCACC

                              *   
        723 ATAATTATTTTTGACAGCCATA
          1 ATAATTATTTTTGACA-CAATA

                                 
        745 ATAATTATTTTTG-C-CAATA
          1 ATAATTATTTTTGACACAATA

             
        764 A
          1 A

        765 ATAAGGTTAG


Statistics
Matches: 19,  Mismatches: 1, Indels: 3
        0.83            0.04        0.13

Matches are distributed among these distances:
  19    5  0.26
  21    1  0.05
  22   13  0.68

ACGTcount: A:0.38, C:0.12, G:0.07, T:0.43


Consensus pattern (21 bp):   
ATAATTATTTTTGACACAATA
Done.