Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019056.1 Corchorus olitorius cultivar O-4 contig19089, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 757

Length: 1263
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.44


Found at i:275 original size:13 final size:12

Alignment explanation


    Indices: 254--288  Score: 61
    Period size: 13  Copynumber: 2.8  Consensus size: 12

        244 AATAAAGTAA

                        
        254 TAATACTATTAT
          1 TAATACTATTAT

                         
        266 TAATTACTATTAT
          1 TAA-TACTATTAT

                      
        279 TAATACTATT
          1 TAATACTATT

        289 TCAATGTCTT


Statistics
Matches: 22,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
  12   10  0.45
  13   12  0.55

ACGTcount: A:0.40, C:0.09, G:0.00, T:0.51


Consensus pattern (12 bp):   
TAATACTATTAT
Done.