Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019057.1 Corchorus olitorius cultivar O-4 contig19090, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97587

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
547--581
13
2.8
12
91
8
61
40
8
0
51
1.33
3091--3136
20
2.3
20
88
0
65
63
6
15
15
1.50
3064--3713
68
9.8
68
82
5
767
49
16
19
14
1.80
3165--3204
20
2.0
20
85
0
53
62
10
12
15
1.54
3226--3269
20
2.2
20
87
0
61
63
6
15
13
1.49
3082--3697
129
4.7
128
87
4
818
49
16
19
14
1.80
3355--3400
20
2.3
20
92
0
74
63
8
10
17
1.51
3413--3446
13
2.5
14
90
4
52
50
11
26
11
1.73
3082--3713
197
3.2
195
82
8
708
49
16
19
14
1.79
3484--3529
20
2.3
20
88
0
65
65
8
10
15
1.47
3618--3659
20
2.1
20
90
0
66
59
4
11
23
1.51
3638--3808
48
3.5
48
86
1
243
45
17
21
15
1.85
3783--3829
20
2.3
20
85
0
67
61
6
12
19
1.52
14813--15419
50
12.1
50
93
0
973
37
15
3
43
1.63
25360--25401
15
2.7
15
96
3
75
11
7
14
66
1.43
33805--33840
19
1.9
18
94
5
63
30
22
8
38
1.83
39488--39532
15
3.3
14
87
9
58
40
15
6
37
1.74
40768--40835
21
3.2
22
70
25
65
36
10
25
27
1.88
40710--40834
43
2.9
43
90
3
182
38
9
25
26
1.87
48504--48560
30
1.9
29
92
3
96
19
35
17
28
1.94
48565--48597
15
2.2
15
94
0
57
27
12
24
36
1.91
51134--51174
14
2.9
15
78
10
50
78
21
0
0
0.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55714--55787
29
2.6
28
87
4
96
40
25
16
17
1.90
55888--55950
30
2.0
32
87
6
94
52
7
11
28
1.65
59499--59534
19
1.9
18
88
5
54
41
5
22
30
1.76
63148--63197
21
2.4
21
82
0
64
12
50
26
12
1.74
67906--67934
15
2.0
15
93
6
51
37
0
13
48
1.43
68915--69104
32
5.9
32
85
0
236
28
20
20
30
1.98
77013--77051
19
2.1
19
90
4
62
33
20
2
43
1.65
80651--80685
15
2.3
15
90
0
52
31
8
8
51
1.63
81936--81962
2
13.5
2
100
0
54
51
0
0
48
1.00
82073--82137
21
3.0
22
68
8
71
12
10
6
70
1.32
82073--82163
47
2.0
44
89
10
141
13
8
8
69
1.37
93355--93425
37
1.9
37
91
5
117
36
15
8
39
1.78
95179--95230
26
2.0
25
81
3
59
57
5
5
30
1.46
95857--95927
37
1.9
37
94
0
124
36
16
8
38
1.80

Tables:   1

The End!