Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019058.1 Corchorus olitorius cultivar O-4 contig19091, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18496

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12374--12399
13
2.0
13
100
0
52
84
0
15
0
0.62
12506--12540
17
2.1
16
94
5
61
57
5
5
31
1.46
12506--12552
14
3.1
15
85
11
53
51
6
8
34
1.58
14175--14374
35
5.7
35
88
4
287
17
21
18
43
1.89
16216--16901
35
20.0
35
81
8
750
16
18
21
43
1.88
16216--16901
71
10.0
70
82
8
750
16
18
21
43
1.88
16216--16903
106
6.7
104
83
9
781
15
19
21
43
1.88
16629--16677
25
2.0
25
91
0
80
16
18
24
40
1.90
16523--16901
126
2.9
129
81
7
361
15
18
22
43
1.87
17428--17572
38
3.8
38
86
0
209
19
15
17
46
1.84
17428--17572
76
1.9
76
91
0
236
19
15
17
46
1.84

Tables:   1

The End!