genome.fa.s19059.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019059.1 Corchorus olitorius cultivar O-4 contig19092, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90418

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1238--1287	21	2.3	23	74	22	54	52	20	14	14	1.75
1243--1282	19	2.0	21	85	14	57	57	15	15	12	1.66
3814--3854	14	2.9	14	85	0	55	65	2	0	31	1.05
12508--12565	27	2.1	27	83	0	71	32	32	1	32	1.68
15351--15516	59	2.8	59	93	0	278	23	20	17	38	1.93
17943--17975	2	16.5	2	100	0	66	48	0	0	51	1.00
20865--21113	26	9.1	26	76	11	230	46	1	23	29	1.60
20904--21113	54	3.8	53	81	10	249	44	0	23	30	1.60
20987--21058	34	2.1	34	92	0	117	43	1	22	33	1.62
21005--21113	55	2.0	53	87	3	155	44	0	22	31	1.59
21058--21140	35	2.3	35	89	2	121	45	1	22	30	1.60
20933--21197	89	3.0	86	83	8	298	44	1	24	29	1.61
21110--21242	26	4.9	26	75	9	131	48	1	22	27	1.59
21131--21195	31	2.1	31	88	0	94	49	1	26	23	1.59
21087--21243	57	2.8	55	82	12	153	48	1	22	27	1.59
21213--21251	21	1.9	20	89	5	60	51	0	17	30	1.46
21417--21461	20	2.2	21	88	4	65	53	4	11	31	1.56
25428--25468	21	2.0	21	85	0	55	36	24	39	0	1.56
33693--33857	58	2.8	59	94	1	296	24	21	15	38	1.93
36274--36310	2	19.5	2	89	10	60	51	0	0	48	1.00
37217--37676	26	16.6	26	67	16	221	46	1	23	29	1.60
37341--37559	34	6.1	34	67	27	123	43	1	23	31	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37260--37623	26	12.8	29	71	18	236	45	1	23	30	1.60
37420--37491	33	2.1	34	87	5	101	44	1	23	30	1.62
37401--37619	61	3.7	59	79	10	227	43	1	24	30	1.62
37289--37631	147	2.4	141	87	6	508	44	1	23	30	1.61
37647--37685	21	1.9	20	89	5	60	51	0	17	30	1.46
37851--37895	20	2.2	21	88	4	65	53	4	11	31	1.56
45202--45246	21	2.1	21	83	0	54	28	31	24	15	1.96
49990--50052	23	2.5	26	85	7	78	23	1	41	33	1.64
52131--52204	37	2.1	34	82	7	85	62	5	13	18	1.50
53427--53462	19	1.9	18	88	5	54	33	22	2	41	1.68
53427--53473	11	4.7	10	80	17	53	31	21	6	40	1.78
76418--76447	15	2.1	15	93	6	53	66	6	13	13	1.43
78127--78173	20	2.3	20	75	7	51	36	0	0	63	0.94

Tables:   1

The End!