Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019061.1 Corchorus olitorius cultivar O-4 contig19094, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50146

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2653--2701
26
1.9
25
84
12
64
40
0
2
57
1.10
2651--2707
25
2.3
25
77
14
64
42
0
1
56
1.10
7818--7890
31
2.3
32
83
6
105
31
12
10
45
1.76
25307--25403
48
2.0
48
97
0
185
34
6
26
32
1.81
26159--26292
65
2.0
66
92
4
225
17
14
10
56
1.66
31910--31968
29
2.0
30
93
3
102
27
27
16
28
1.97
31957--31985
14
2.0
15
93
6
51
34
27
6
31
1.83
43690--43733
14
2.9
15
83
6
54
20
27
9
43
1.82
46163--46192
2
15.0
2
100
0
60
50
0
0
50
1.00
47925--48006
39
2.0
40
90
4
130
8
20
31
39
1.83
47925--48006
41
2.1
39
88
4
119
8
20
31
39
1.83
49517--49572
28
1.9
30
85
7
80
48
5
7
39
1.54

Tables:   1

The End!