Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019065.1 Corchorus olitorius cultivar O-4 contig19098, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47856

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
598--651
28
1.9
28
81
7
65
46
5
12
35
1.66
5119--5160
16
2.6
16
100
0
84
35
42
11
9
1.74
5640--5711
31
2.3
31
75
17
78
26
4
8
61
1.43
5960--6006
13
3.8
12
78
13
51
40
0
4
55
1.19
6152--6207
16
3.5
17
80
9
64
41
37
14
7
1.73
13204--13268
32
2.0
32
91
5
105
41
18
10
29
1.84
15737--15769
12
2.6
13
90
9
59
69
21
0
9
1.15
17231--17294
12
5.1
12
78
17
67
43
1
0
54
1.09
17233--17294
16
3.7
16
75
12
54
43
1
0
54
1.09
20082--20122
20
2.1
19
86
4
55
34
2
4
58
1.32
20533--20579
17
2.8
17
78
12
60
17
23
21
38
1.93
29565--29601
4
9.5
4
94
5
67
21
0
0
78
0.75
46901--46930
15
1.9
16
93
6
53
43
0
3
53
1.17

Tables:   1

The End!