Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019066.1 Corchorus olitorius cultivar O-4 contig19099, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41117

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
971--2768
335
5.4
332
78
8
1565
33
14
15
36
1.88
2199--2227
2
14.5
2
100
0
58
51
0
0
48
1.00
2603--2922
158
2.0
157
83
7
407
29
20
15
34
1.94
8629--8715
30
2.9
29
80
8
95
45
4
32
17
1.68
10995--11024
3
9.7
3
92
7
51
66
0
0
33
0.92
13502--13633
66
2.0
66
100
0
264
16
1
25
56
1.49
13771--13795
11
2.3
11
100
0
50
92
8
0
0
0.40
23184--23261
38
2.1
37
88
7
113
34
12
11
41
1.80
28685--28712
1
28.0
1
100
0
56
100
0
0
0
0.00
40471--40497
12
2.2
12
100
0
54
51
0
0
48
1.00
40763--40951
22
8.5
22
74
8
132
37
11
14
37
1.81
41020--41117
22
4.5
22
79
8
94
34
11
18
35
1.86

Tables:   1

The End!