Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019069.1 Corchorus olitorius cultivar O-4 contig19102, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73656

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--2808
332
8.5
329
78
7
2534
37
14
14
34
1.86
1967--1993
2
13.5
2
100
0
54
51
0
0
48
1.00
3042--3194
60
2.5
60
90
0
234
33
19
18
28
1.96
3094--3194
31
3.3
31
71
15
102
37
20
17
23
1.94
3240--3397
59
2.7
60
86
4
212
27
16
17
38
1.91
3535--3564
15
1.9
16
93
6
53
53
3
0
43
1.17
3662--3990
170
2.0
160
90
7
516
44
7
10
36
1.69
7593--7621
4
7.5
4
92
7
51
75
0
24
0
0.80
11309--12781
334
4.4
331
76
8
1248
33
13
15
38
1.86
17210--17289
41
2.0
41
94
0
142
30
11
13
45
1.79
21287--21333
22
2.1
22
84
0
58
42
8
2
46
1.46
21783--21812
15
1.9
16
93
6
53
43
0
3
53
1.17
22203--23592
634
2.2
639
79
8
1475
33
14
15
36
1.88
23592--26604
332
9.0
329
77
9
2473
32
14
15
37
1.87
28466--28575
58
1.9
58
83
3
141
33
14
19
32
1.92
29849--29918
36
1.9
36
91
0
113
21
10
8
60
1.55
30254--30665
203
2.0
204
93
2
713
44
8
11
36
1.71
30775--30855
39
2.0
41
88
4
121
34
3
8
53
1.50
32424--32503
15
5.6
15
69
19
55
37
2
3
56
1.31
34180--34347
22
7.6
22
71
12
121
35
9
14
40
1.79
34158--34347
44
4.3
44
78
6
170
36
8
14
40
1.77
39633--39673
16
2.7
15
77
7
55
51
9
0
39
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40879--40965
41
2.1
42
89
2
131
40
1
10
48
1.45
42208--42245
19
2.0
19
100
0
76
21
5
21
52
1.66
43878--43916
17
2.3
17
100
0
78
51
0
10
38
1.36
44383--44452
35
2.0
35
100
0
140
48
14
11
25
1.77
46793--47181
22
17.5
22
69
14
140
39
8
16
34
1.80
47073--47289
44
4.9
45
74
10
162
33
11
16
38
1.85
47077--47289
22
9.7
22
74
10
134
33
11
15
39
1.84
47069--47265
66
3.0
65
76
3
173
34
10
17
38
1.84
47100--47287
66
2.8
66
76
5
182
34
11
14
39
1.83
51252--51291
12
3.0
14
78
14
57
5
25
10
60
1.49
51252--51301
26
2.0
26
88
4
75
6
24
8
62
1.46
55867--55891
12
2.1
12
100
0
50
16
16
8
60
1.58
56987--57024
19
2.0
19
100
0
76
21
5
21
52
1.66
58105--60967
330
8.7
326
77
9
2479
36
15
13
33
1.87
72244--72360
37
2.9
42
81
15
154
29
23
9
37
1.86
72754--73646
334
2.7
333
83
6
1050
36
16
15
31
1.89

Tables:   1

The End!