Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019071.1 Corchorus olitorius cultivar O-4 contig19104, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60886

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1287--1326
16
2.5
16
100
0
80
25
22
7
45
1.78
2115--2158
21
2.0
22
95
4
81
36
13
0
50
1.42
3188--3276
44
2.0
44
100
0
178
20
8
15
55
1.67
3493--3624
66
2.0
67
92
4
221
31
18
6
43
1.77
3758--3822
29
2.3
30
84
12
84
26
16
9
47
1.77
12125--12164
20
2.0
21
90
5
64
37
17
27
17
1.92
22733--22793
29
2.1
28
88
8
88
52
29
0
18
1.45
23052--23094
17
2.5
17
84
0
59
27
27
4
39
1.76
32789--32872
42
2.0
43
88
9
127
23
17
22
35
1.95
34502--34532
12
2.6
12
89
0
53
48
32
19
0
1.49
35790--35847
19
2.9
20
82
5
73
31
20
12
36
1.89
36455--36485
16
1.9
16
100
0
62
32
25
6
35
1.82
38264--38302
14
2.8
13
88
7
51
46
0
0
53
1.00
40842--40881
20
2.0
20
100
0
80
35
5
20
40
1.74
40904--40990
29
3.2
29
62
26
71
25
11
19
43
1.84
41024--41186
54
3.0
54
97
0
299
26
15
23
34
1.95
49815--49851
18
2.0
19
89
5
58
29
27
24
18
1.98
55455--55519
31
2.1
31
100
0
130
50
18
10
20
1.76
56922--57698
427
1.8
420
86
4
1112
30
16
13
39
1.87

Tables:   1

The End!