Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019072.1 Corchorus olitorius cultivar O-4 contig19105, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75013

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2945--2974
2
15.0
2
100
0
60
50
0
0
50
1.00
4708--4769
31
2.1
31
81
6
74
40
16
9
33
1.81
8317--8386
35
2.0
35
94
0
122
42
17
1
38
1.58
30011--30059
25
2.0
25
100
0
98
38
24
4
32
1.74
35803--35896
30
3.2
30
65
22
81
22
9
7
60
1.52
35789--35906
58
2.0
58
98
0
227
20
12
6
60
1.55
50854--50912
3
19.7
3
82
0
64
33
33
3
28
1.74
51742--51821
31
2.6
31
78
4
90
37
23
7
31
1.83
53249--57294
327
12.3
326
76
10
2668
36
15
13
33
1.88
57770--57799
15
1.9
16
93
6
53
53
3
0
43
1.17
58126--58223
22
4.5
22
76
10
94
32
17
10
39
1.83
58133--58248
22
5.4
22
74
8
62
30
18
8
43
1.80
59353--59384
15
2.1
15
100
0
64
40
31
0
28
1.57
62009--62068
32
1.9
32
82
3
77
33
15
11
40
1.83
63591--63662
10
7.0
10
73
6
63
31
22
12
33
1.91
63612--63662
21
2.4
21
90
0
75
31
23
11
33
1.91
64513--65499
428
2.3
424
83
5
1148
30
14
12
42
1.83
65728--65765
19
2.0
19
94
0
67
39
18
21
21
1.93
65825--65868
22
2.0
22
82
8
54
2
18
6
72
1.17
65832--65881
21
2.3
21
83
10
57
2
20
2
76
0.99
65832--65881
22
2.3
21
86
3
64
2
20
2
76
0.99
66855--66923
31
2.2
31
94
0
120
37
14
14
33
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71432--71533
51
2.0
51
98
0
195
43
16
16
23
1.88

Tables:   1

The End!