Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019073.1 Corchorus olitorius cultivar O-4 contig19106, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2052
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34


Found at i:682 original size:20 final size:20

Alignment explanation


    Indices: 657--696  Score: 80
    Period size: 20  Copynumber: 2.0  Consensus size: 20

        647 GTTTAACAAA

                                
        657 ATTAAAATGAAAAAAGAAAT
          1 ATTAAAATGAAAAAAGAAAT

                                
        677 ATTAAAATGAAAAAAGAAAT
          1 ATTAAAATGAAAAAAGAAAT

        697 TAAAATACAA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.70, C:0.00, G:0.10, T:0.20


Consensus pattern (20 bp):   
ATTAAAATGAAAAAAGAAAT
Done.