Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019080.1 Corchorus olitorius cultivar O-4 contig19113, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25400

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
856--920
31
2.1
31
85
5
87
35
20
9
35
1.84
1681--1881
93
2.0
101
83
11
258
33
7
15
42
1.77
9679--9711
10
3.3
10
91
0
57
24
30
12
33
1.91
11206--11273
29
2.3
31
90
7
106
33
13
23
29
1.93
16473--16580
56
2.0
55
80
7
121
32
13
20
33
1.92
18324--18373
15
3.2
16
75
13
50
40
0
2
58
1.10
18741--20474
335
5.2
329
78
8
1566
34
14
14
36
1.87
18739--20474
666
2.6
665
82
7
1961
34
14
14
36
1.87
20569--21910
334
4.0
330
78
4
1330
33
14
15
37
1.88
20612--21979
671
2.0
669
80
5
1523
33
13
15
37
1.87
23494--23615
63
1.9
63
81
3
147
22
21
16
39
1.92

Tables:   1

The End!