Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019085.1 Corchorus olitorius cultivar O-4 contig19118, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15038

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2646--2706
32
1.9
32
93
0
104
47
6
19
26
1.74
2902--3027
57
2.2
58
81
9
150
50
15
11
22
1.76
3175--3242
28
2.3
30
95
5
122
13
14
14
57
1.66
3629--3743
57
2.0
56
98
1
221
34
23
1
40
1.65
3810--3876
21
3.2
21
64
16
57
28
5
14
50
1.66
3809--3889
42
1.9
42
94
0
144
29
6
16
48
1.70
8264--8306
16
2.8
16
92
3
70
51
11
0
37
1.39
8362--8393
13
2.5
13
94
0
55
12
46
9
31
1.73
8493--8574
41
2.0
41
92
0
137
26
13
19
40
1.89
8573--8609
13
2.8
13
87
0
56
32
0
43
24
1.55
10092--10135
15
2.9
14
86
10
52
47
4
0
47
1.22
11455--11562
48
2.3
48
81
1
119
23
15
23
37
1.93
11629--11801
48
3.6
45
74
13
134
22
14
22
40
1.90
11675--11935
48
5.5
46
74
11
147
22
16
23
38
1.93
12139--12183
19
2.4
19
85
3
56
44
2
2
51
1.26
13977--14104
48
2.7
47
80
11
118
28
15
17
39
1.90
14390--14515
48
2.6
48
85
5
148
20
13
22
43
1.86
14728--14877
47
3.2
45
81
8
140
19
22
22
36
1.95
14881--15026
47
3.1
47
73
8
127
21
15
16
46
1.84

Tables:   1

The End!