Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019088.1 Corchorus olitorius cultivar O-4 contig19121, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2700
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.38


Found at i:2311 original size:19 final size:21

Alignment explanation


    Indices: 2287--2338  Score: 81
    Period size: 19  Copynumber: 2.6  Consensus size: 21

       2277 TATTTTTATG

                            *    
       2287 AAATTTTGATAACC-CTA-AT
          1 AAATTTTGATAACCACCATAT

                                 
       2306 AAATTTTGATAACCACCATAT
          1 AAATTTTGATAACCACCATAT

                        
       2327 AAATTTTGATAA
          1 AAATTTTGATAA

       2339 GGGTGTTACT


Statistics
Matches: 30,  Mismatches: 1, Indels: 2
        0.91            0.03        0.06

Matches are distributed among these distances:
  19   14  0.47
  20    2  0.07
  21   14  0.47

ACGTcount: A:0.44, C:0.13, G:0.06, T:0.37


Consensus pattern (21 bp):   
AAATTTTGATAACCACCATAT

Done.