Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019089.1 Corchorus olitorius cultivar O-4 contig19122, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1895
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:550 original size:56 final size:56

Alignment explanation


    Indices: 481--586  Score: 194
    Period size: 56  Copynumber: 1.9  Consensus size: 56

        471 AATTTTGATA

                                 *                                  
        481 ATTTTGTTAATCTCCCTATAATTTTTTGATACTATAGTATGAAATTTCGATGTGAG
          1 ATTTTGTTAATCTCCCTATAACTTTTTGATACTATAGTATGAAATTTCGATGTGAG

                           *                                  
        537 ATTTTGTTAATCTCCTTATAACTTTTTGATACTATAGTATGAAATTTCGA
          1 ATTTTGTTAATCTCCCTATAACTTTTTGATACTATAGTATGAAATTTCGA

        587 CAATCTTTCT


Statistics
Matches: 48,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  56   48  1.00

ACGTcount: A:0.29, C:0.11, G:0.12, T:0.47


Consensus pattern (56 bp):   
ATTTTGTTAATCTCCCTATAACTTTTTGATACTATAGTATGAAATTTCGATGTGAG
Done.