genome.fa.s19090.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019090.1 Corchorus olitorius cultivar O-4 contig19123, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73175

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16--49	2	16.5	2	87	6	50	44	0	2	52	1.16
723--852	63	2.1	62	95	1	233	36	14	16	32	1.89
1493--1574	38	2.1	39	86	4	112	53	8	2	35	1.45
3328--3359	16	1.9	17	93	6	57	21	21	0	56	1.43
3397--3463	32	2.1	33	91	8	111	40	5	14	38	1.71
7175--7251	33	2.4	30	78	17	84	53	1	1	44	1.17
7180--7242	14	4.4	14	73	13	56	53	1	1	42	1.19
9780--9863	42	2.0	42	95	0	150	40	25	17	16	1.90
15147--15187	19	2.2	19	100	0	82	43	0	41	14	1.45
16096--16141	14	3.2	14	77	17	58	52	6	6	34	1.53
16096--16142	13	3.4	13	74	25	51	51	6	6	36	1.53
16249--16281	5	6.8	5	86	6	50	78	0	0	21	0.75
17856--17885	15	1.9	16	93	6	53	0	20	0	80	0.72
20357--20393	14	2.6	15	83	12	51	8	13	29	48	1.71
21300--21451	77	2.0	75	90	2	241	28	3	21	46	1.69
24328--24359	13	2.5	13	95	5	57	0	12	31	56	1.37
24845--24918	37	2.0	37	97	0	139	28	20	13	37	1.90
30036--30068	16	2.1	16	94	5	59	15	6	12	66	1.42
31934--32065	68	1.9	68	98	0	255	34	5	18	40	1.74
32002--32174	90	2.0	89	88	5	262	34	7	17	41	1.78
35440--35482	18	2.4	18	96	0	77	30	18	13	37	1.90
35975--36017	18	2.4	18	96	0	77	30	18	13	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35317--36385	535	2.0	534	98	0	2066	28	17	18	35	1.94
41185--41217	9	3.7	9	84	15	50	69	0	0	30	0.88
45113--45142	13	2.3	13	94	0	51	20	30	30	20	1.97
45172--45246	29	2.6	29	84	2	87	40	18	22	18	1.92
45186--45246	29	2.1	29	90	0	95	40	18	22	18	1.91
50733--50802	36	1.9	36	94	0	122	34	2	21	41	1.68
50732--50786	18	3.0	19	67	17	53	32	1	21	43	1.63
51619--51648	13	2.4	13	94	5	53	63	0	0	36	0.95
52727--52880	76	2.0	76	86	2	211	44	23	4	27	1.72
59300--59332	14	2.3	15	89	5	50	48	15	6	30	1.69
59577--60131	22	24.6	22	71	10	246	36	9	17	36	1.83
59641--59839	48	4.3	43	75	14	132	40	9	17	33	1.81
61172--61267	48	2.0	47	89	2	147	44	11	4	39	1.60
62227--62442	73	3.0	73	83	7	262	40	19	17	22	1.91
63598--63726	64	2.0	64	98	0	249	51	11	17	19	1.75
64362--64505	74	1.9	74	97	0	270	36	15	37	10	1.82
65118--65146	15	1.9	15	100	0	58	34	34	20	10	1.87
65142--65172	15	2.1	15	93	0	53	29	29	29	12	1.94
71396--71479	38	2.2	38	89	2	125	46	8	3	41	1.51
71619--71674	2	29.0	2	92	7	98	51	0	0	48	1.00

Tables:   1

The End!