genome.fa.s19091.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019091.1 Corchorus olitorius cultivar O-4 contig19124, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85190

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5293--5322	14	2.1	14	93	0	51	33	6	3	56	1.42
9556--9602	23	2.0	24	84	12	62	36	4	8	51	1.52
18189--18213	2	12.5	2	100	0	50	48	0	0	52	1.00
20775--20799	13	1.9	13	100	0	50	24	0	0	76	0.80
21654--21691	11	3.5	11	85	10	51	57	2	0	39	1.12
26980--27024	22	2.0	22	91	0	72	0	31	11	57	1.33
31337--31488	82	1.9	80	95	2	277	44	10	2	42	1.52
40325--40383	30	2.0	30	86	0	82	37	22	27	13	1.91
55183--58104	338	8.9	331	78	7	2654	36	15	14	33	1.88
55196--58104	665	4.4	654	78	9	2474	36	15	14	33	1.88
57469--58634	634	1.8	629	83	5	1542	37	15	13	33	1.87
57818--58395	300	1.9	299	85	3	788	36	14	15	33	1.88
58973--59002	15	1.9	16	93	6	53	53	3	0	43	1.17
59708--59846	69	2.0	69	97	0	260	25	23	27	23	2.00
60914--60974	31	2.1	31	84	9	83	32	1	9	55	1.42
61100--61140	12	3.5	12	80	6	57	56	4	0	39	1.21
62329--62499	31	5.5	31	90	1	227	16	26	26	29	1.97
62320--62497	61	2.9	62	85	2	234	15	26	26	30	1.96
62332--62499	92	1.8	92	85	0	237	16	26	27	30	1.96
64766--64885	41	3.0	40	89	4	129	12	18	25	43	1.85
64802--64871	20	3.5	20	64	3	59	12	12	25	48	1.77
64787--64885	41	2.4	41	98	0	189	12	19	27	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64806--64904	41	2.6	37	86	12	123	16	15	25	43	1.86
64998--65032	18	1.9	18	94	0	61	51	11	8	28	1.67
65237--65311	35	2.1	35	97	0	141	41	17	18	22	1.90
70951--70981	14	2.2	14	94	0	53	38	9	29	22	1.86
78496--78574	3	26.3	3	97	0	149	32	1	0	65	1.00
80444--80547	52	2.0	52	96	0	190	26	3	19	50	1.65
83498--83604	35	3.1	35	89	6	155	42	28	11	18	1.85

Tables:   1

The End!