Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019096.1 Corchorus olitorius cultivar O-4 contig19129, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56209

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2155--2187
14
2.3
15
89
5
50
42
0
15
42
1.46
9029--9288
106
2.5
105
90
3
400
41
8
8
41
1.66
10562--10588
10
2.7
10
100
0
54
40
25
11
22
1.87
11341--11417
31
2.5
31
85
4
102
33
11
18
36
1.87
14692--14978
106
2.7
105
89
3
418
40
8
8
43
1.65
15668--15719
27
2.0
27
84
3
70
57
15
5
21
1.58
18548--18688
54
3.0
44
79
18
174
36
19
12
32
1.88
18590--18698
54
2.0
53
96
1
200
33
18
13
33
1.90
24311--24343
12
2.6
13
85
4
50
75
0
24
0
0.80
25815--26202
207
1.9
207
82
3
485
23
23
18
34
1.96
53016--53065
26
1.9
26
91
0
82
52
20
12
16
1.75
55819--55874
25
2.3
23
85
8
76
60
3
5
30
1.36

Tables:   1

The End!