Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019098.1 Corchorus olitorius cultivar O-4 contig19131, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71560

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
528--556
15
1.9
15
100
0
58
27
13
24
34
1.93
5338--5362
13
1.9
13
100
0
50
0
12
0
88
0.53
5783--5816
17
1.9
18
94
5
61
61
17
5
14
1.52
9558--9598
14
2.8
16
82
17
54
36
0
0
63
0.95
10330--10363
2
17.0
2
100
0
68
50
0
0
50
1.00
14163--14230
31
2.2
31
84
5
84
35
14
17
32
1.91
14342--14388
25
1.9
25
91
4
78
51
4
12
31
1.59
22968--22998
14
2.2
14
94
0
53
41
12
16
29
1.85
31380--31526
22
6.8
21
72
14
104
39
6
12
40
1.70
36022--36052
10
3.1
10
95
0
53
0
0
12
87
0.55
42585--42664
29
2.7
30
88
3
108
30
16
12
41
1.85
42797--42861
31
2.1
31
100
0
130
40
12
15
32
1.84
43851--43911
31
2.0
31
100
0
122
42
16
3
37
1.64
43861--43956
31
3.1
31
82
8
106
36
14
9
39
1.79
44100--44173
29
2.5
30
86
4
96
44
13
17
24
1.85
45783--46031
106
2.3
106
91
2
392
38
10
8
43
1.68
52778--53106
107
3.1
106
80
11
343
42
6
8
42
1.61
63513--64081
284
2.0
283
80
4
637
36
16
14
33
1.89
63797--68132
332
13.3
330
71
13
1881
37
16
13
32
1.88
65929--67876
976
2.0
978
80
6
2230
37
15
13
33
1.88
65795--68127
332
7.1
331
78
8
1909
37
15
13
33
1.87
71322--71384
29
2.2
29
97
0
117
41
25
6
26
1.79

Tables:   1

The End!