Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001910.1 Corchorus olitorius cultivar O-4 contig01910, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 838

Length: 1398
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.30


Found at i:31 original size:17 final size:17

Alignment explanation


    Indices: 9--49  Score: 82
    Period size: 17  Copynumber: 2.4  Consensus size: 17

          1 CTAGATCT

                             
          9 AAAAATTCCGAAATTTC
          1 AAAAATTCCGAAATTTC

                             
         26 AAAAATTCCGAAATTTC
          1 AAAAATTCCGAAATTTC

                   
         43 AAAAATT
          1 AAAAATT

         50 TTCGTTTGAG


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   24  1.00

ACGTcount: A:0.51, C:0.15, G:0.05, T:0.29


Consensus pattern (17 bp):   
AAAAATTCCGAAATTTC
Done.