Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019100.1 Corchorus olitorius cultivar O-4 contig19133, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54590

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1543
332
4.7
327
79
7
1553
32
14
15
36
1.89
3807--3867
32
1.9
32
93
0
104
47
6
19
26
1.74
6611--6679
30
2.3
31
82
7
79
20
7
13
59
1.57
6625--6686
31
2.0
30
87
9
90
17
4
16
61
1.51
15267--16278
335
3.0
327
78
7
1045
37
15
14
33
1.87
19168--19213
5
9.2
5
100
0
92
58
0
19
21
1.39
26596--26641
24
1.9
24
90
0
74
32
8
45
13
1.73
26578--26642
30
2.2
30
100
0
130
32
9
44
13
1.76
28285--28365
42
1.9
42
97
0
153
41
16
14
27
1.87
34831--34909
33
2.5
32
83
4
97
13
25
26
34
1.94
51079--51104
2
13.0
2
100
0
52
50
0
0
50
1.00
52026--52068
21
2.0
21
82
8
52
53
4
9
32
1.53

Tables:   1

The End!