Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019102.1 Corchorus olitorius cultivar O-4 contig19135, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123927

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4655--4680
12
2.2
12
100
0
52
7
15
42
34
1.75
6304--6518
109
2.0
109
94
0
376
31
11
13
43
1.79
10391--10567
90
2.0
88
93
2
300
32
14
6
46
1.70
10701--10734
13
2.6
13
95
0
59
23
8
0
67
1.18
17145--17169
7
3.6
7
100
0
50
0
12
12
76
1.04
17191--17220
15
1.9
16
93
6
53
43
3
26
26
1.70
18290--18362
27
2.7
27
100
0
146
47
9
2
39
1.50
20101--20177
38
2.0
38
100
0
154
48
5
28
18
1.69
38490--38539
24
2.0
24
85
11
66
64
32
0
4
1.12
40673--40833
81
2.0
80
87
6
236
33
12
12
41
1.80
42978--43025
17
2.8
17
83
0
51
33
16
22
27
1.96
54297--54451
79
2.0
79
97
0
292
24
14
11
49
1.77
55434--55489
15
3.9
15
77
13
64
0
35
32
32
1.58
55432--55488
27
2.1
27
90
0
87
0
33
33
33
1.58
56166--56241
38
2.0
38
97
0
143
34
25
23
17
1.96
57033--57057
9
2.8
9
100
0
50
20
20
0
60
1.37
63157--63203
23
2.0
23
100
0
94
29
21
17
31
1.96
63346--63378
17
2.0
17
94
5
59
45
0
0
54
0.99
73496--73714
112
2.0
112
96
0
402
27
9
21
41
1.84
84164--84211
13
3.6
13
80
8
53
45
4
4
45
1.41
86025--86385
121
3.0
121
100
0
722
29
19
17
32
1.95
86612--86648
8
4.9
8
83
12
51
40
0
0
59
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
86894--86923
15
1.9
16
93
6
53
43
0
3
53
1.17
87277--91929
330
14.1
328
76
10
3251
33
14
15
36
1.88
90714--90744
2
15.5
2
100
0
62
48
0
0
51
1.00
90907--91798
331
2.7
332
80
5
987
32
13
16
36
1.88
93094--93118
13
1.9
13
100
0
50
28
0
0
72
0.86
95918--95963
18
2.6
18
82
0
56
34
0
2
63
1.07
96871--96901
15
2.1
15
100
0
62
35
19
12
32
1.90
114019--114099
31
2.6
32
84
5
103
29
24
27
18
1.98
119395--119446
17
3.2
16
83
10
70
34
0
13
51
1.41
119394--119441
15
3.0
16
85
8
71
37
0
12
50
1.41
123089--123171
30
2.7
31
87
3
116
38
6
24
31
1.79
123089--123171
31
2.7
30
88
1
112
38
6
24
31
1.79
123355--123489
16
8.5
16
77
10
143
7
14
40
37
1.73
123355--123489
32
4.2
32
92
0
218
7
14
40
37
1.73
123663--123716
13
4.3
12
75
15
56
55
3
0
40
1.17

Tables:   1

The End!