Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019105.1 Corchorus olitorius cultivar O-4 contig19138, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31464

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3799--3833
18
1.9
18
94
0
61
51
11
8
28
1.67
3872--3900
9
3.3
9
90
9
51
48
0
0
51
1.00
4032--4106
35
2.1
35
90
9
118
41
18
17
22
1.90
5688--5712
5
5.0
5
100
0
50
20
20
0
60
1.37
5801--5857
27
2.1
27
87
3
80
22
8
3
64
1.37
5964--5993
15
1.9
16
93
6
53
43
0
3
53
1.17
6345--9531
654
4.8
662
79
6
3267
33
13
15
37
1.88
13051--13310
30
8.5
30
92
3
423
51
9
21
16
1.73
13049--13310
61
4.3
61
93
2
440
51
9
21
16
1.73
13049--13310
31
8.6
30
91
3
418
51
9
21
16
1.73
20127--20162
16
2.3
15
90
4
54
55
0
0
44
0.99
20268--20331
14
4.6
15
88
9
84
51
0
0
48
1.00
20281--20330
18
2.7
18
88
11
75
56
0
0
44
0.99
20281--20328
5
10.4
5
86
13
68
56
0
0
43
0.99
20284--20330
9
5.2
9
87
12
62
55
0
0
44
0.99
20989--21023
17
2.1
17
100
0
70
60
5
22
11
1.52
23422--26364
334
8.9
331
76
9
2350
36
15
14
33
1.88
27186--28131
332
2.9
329
82
5
1068
37
15
14
32
1.88
28535--28564
15
1.9
16
93
6
53
53
3
0
43
1.17

Tables:   1

The End!