Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019107.1 Corchorus olitorius cultivar O-4 contig19140, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71807

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4415--4457
18
2.4
19
92
7
72
55
13
9
20
1.66
6066--6105
21
2.0
20
85
5
53
17
20
20
42
1.89
9140--9202
31
2.0
31
84
6
83
34
30
22
12
1.91
9620--9645
13
2.0
13
100
0
52
61
0
0
38
0.96
11434--11466
15
2.3
15
89
5
50
0
18
0
81
0.68
12015--12066
13
4.0
14
82
9
58
40
1
0
57
1.10
14182--14578
213
1.9
210
88
1
605
28
19
16
35
1.94
16456--16500
2
23.0
2
95
4
83
51
0
0
48
1.00
23672--23707
13
2.7
13
91
4
54
63
22
11
2
1.39
25592--25687
46
2.1
47
98
2
185
25
29
12
33
1.92
25652--25721
34
2.1
34
100
0
140
25
30
11
32
1.91
25606--25765
80
2.0
80
98
0
311
26
28
12
31
1.93
25783--25846
32
2.0
32
100
0
128
34
31
18
15
1.93
27879--27973
50
1.9
50
95
0
172
30
9
21
38
1.85
39374--39416
17
2.5
17
81
7
52
4
13
2
79
1.00
54781--54817
2
18.5
2
100
0
74
48
0
0
51
1.00
60362--64159
331
11.5
328
77
7
3054
37
15
13
33
1.87
65267--65296
15
1.9
16
93
6
53
53
3
0
43
1.17
65561--65586
8
3.2
8
100
0
52
50
0
23
26
1.50
71536--71560
2
12.5
2
100
0
50
52
0
0
48
1.00
70169--71802
340
4.9
329
78
8
1436
36
15
15
32
1.89

Tables:   1

The End!