Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019108.1 Corchorus olitorius cultivar O-4 contig19141, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52513

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1253
331
3.8
328
81
6
1311
35
15
13
34
1.88
2361--2412
21
2.5
21
76
14
54
57
5
1
34
1.33
2390--2466
18
4.1
18
79
11
66
54
2
2
40
1.28
2642--2733
5
19.4
5
89
10
149
57
0
20
21
1.41
4226--4294
29
2.4
28
88
7
111
24
23
15
36
1.94
5620--5696
32
2.4
32
84
2
93
20
23
23
32
1.98
7436--7484
25
2.0
25
100
0
98
32
20
32
14
1.92
12631--12662
16
2.0
16
100
0
64
50
6
25
18
1.70
15882--15964
32
2.6
32
94
1
141
34
3
20
40
1.70
26990--27017
1
28.0
1
100
0
56
0
0
0
100
0.00
38918--38981
31
2.1
31
96
0
119
31
7
0
60
1.25
39573--39611
20
2.0
20
100
0
78
41
5
23
30
1.76
40203--40379
91
2.0
90
92
4
295
40
12
14
32
1.84
43082--43118
2
19.0
2
94
5
67
48
0
0
51
1.00
43080--43117
17
2.1
18
90
9
60
47
0
0
52
1.00
52238--52416
88
2.1
87
93
4
308
40
13
10
35
1.80

Tables:   1

The End!