Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019110.1 Corchorus olitorius cultivar O-4 contig19143, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48390

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1561--2731
328
3.6
326
78
8
994
33
13
16
37
1.87
3712--3761
25
2.0
25
96
0
91
32
26
8
34
1.85
9372--9459
41
2.1
41
100
0
176
32
42
2
22
1.66
10528--11873
330
4.0
330
76
9
1172
37
15
14
32
1.87
12450--13336
336
2.7
331
78
8
817
37
14
15
32
1.88
14422--14481
6
10.2
6
89
3
86
51
0
15
33
1.43
14422--14481
29
2.0
29
87
3
84
51
0
15
33
1.43
17528--17588
30
2.0
30
100
0
122
37
9
26
26
1.87
18668--18737
34
2.0
35
88
2
106
37
14
15
32
1.88
21985--22092
47
2.3
47
96
0
198
25
3
17
52
1.61
25036--26961
323
5.9
321
78
6
1689
33
14
15
36
1.88
28559--28587
2
14.5
2
100
0
58
48
0
0
51
1.00
46529--46643
58
2.0
58
89
3
178
33
14
20
32
1.93
47901--47970
36
1.9
36
91
0
113
21
10
8
60
1.55

Tables:   1

The End!