Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019115.1 Corchorus olitorius cultivar O-4 contig19148, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37184

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
779--809
2
16.0
2
93
6
55
48
0
0
51
1.00
1934--2718
332
2.3
327
80
6
887
31
14
16
37
1.89
4529--4575
22
2.1
22
84
7
60
59
4
4
31
1.36
4966--5005
21
2.0
20
85
9
55
52
5
2
40
1.37
6041--6113
28
2.5
29
74
12
69
38
15
27
19
1.91
8190--8221
15
2.1
15
100
0
64
37
6
6
50
1.53
17185--17221
18
2.0
19
89
5
58
83
10
5
0
0.79
17186--17214
14
2.1
14
93
6
51
89
6
3
0
0.57
19330--19382
22
2.4
23
84
6
74
18
5
3
71
1.21
19330--19382
23
2.4
22
81
12
65
18
5
3
71
1.21
19330--19394
22
3.0
22
80
8
62
15
7
4
72
1.24
21247--21282
18
1.9
19
88
5
56
33
25
0
41
1.55
22292--22507
22
9.8
21
69
14
114
35
12
9
42
1.76
23638--23708
14
5.0
14
81
10
74
64
0
11
23
1.25
35920--35955
18
2.1
18
89
5
56
27
22
0
50
1.50
36888--36948
15
3.9
15
75
14
61
44
1
0
54
1.10

Tables:   1

The End!