Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019117.1 Corchorus olitorius cultivar O-4 contig19150, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14983

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3637--3685
23
2.1
23
88
0
71
32
8
14
44
1.74
5129--5221
42
2.3
41
90
7
145
37
0
13
48
1.43
5146--5224
15
5.5
15
66
19
51
36
0
11
51
1.38
6288--6666
107
3.5
107
89
3
530
41
5
8
43
1.60
10508--10587
40
2.0
40
87
4
117
42
6
15
36
1.72
10844--10878
2
17.5
2
100
0
70
51
0
0
48
1.00
11560--11805
124
2.0
125
88
4
372
34
17
16
32
1.92
12239--12281
22
2.0
22
90
0
68
39
25
9
25
1.85
14358--14426
22
3.1
23
87
8
81
28
5
23
42
1.77
14438--14658
22
9.8
22
72
12
137
38
10
17
33
1.84
14529--14680
44
3.5
44
77
8
141
38
11
15
34
1.84
14559--14686
22
5.8
22
75
10
93
39
11
14
35
1.82
14689--14835
22
6.9
21
69
9
84
36
10
17
35
1.85
14802--14846
22
2.0
22
82
0
54
33
6
13
46
1.69
14893--14934
21
2.0
22
85
4
59
42
4
11
40
1.63

Tables:   1

The End!