Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019118.1 Corchorus olitorius cultivar O-4 contig19151, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81209

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2675--2732
22
2.8
20
80
12
64
41
8
8
41
1.66
2765--3523
22
35.1
22
68
12
216
38
17
8
35
1.79
3005--3212
107
1.9
106
79
9
226
38
13
8
38
1.75
3263--3385
21
5.6
21
75
15
88
41
13
4
40
1.65
3311--3380
24
3.0
24
72
19
85
44
10
5
40
1.62
3290--3380
45
2.0
45
100
0
182
42
10
4
41
1.60
3290--3411
45
2.8
44
88
6
140
43
11
4
40
1.62
3371--3483
58
1.9
59
85
1
156
40
18
7
33
1.78
3479--3525
21
2.2
22
77
11
53
38
19
10
31
1.86
3635--3782
22
6.8
22
67
10
70
36
16
10
36
1.83
3743--3796
22
2.6
21
80
8
65
33
22
9
35
1.86
3818--3873
22
2.5
22
82
0
76
46
16
5
32
1.69
6139--6173
11
3.3
11
88
4
54
14
5
0
80
0.89
7099--7153
16
3.2
16
78
16
58
54
0
3
41
1.18
8153--8230
41
1.9
41
91
0
129
42
15
1
41
1.55
12094--12127
18
1.9
17
88
5
50
32
8
14
44
1.76
12847--13043
99
2.0
99
88
5
292
44
10
8
37
1.68
12847--13044
50
4.0
50
87
7
269
44
10
8
36
1.68
14027--14088
18
3.3
18
71
20
63
25
17
32
24
1.97
17632--17706
35
2.1
35
95
0
132
22
17
17
42
1.89
17748--17779
16
2.0
16
93
0
55
53
0
0
46
1.00
17732--17784
19
2.8
19
82
8
63
50
0
0
49
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17756--17805
25
1.9
27
88
8
77
54
4
0
42
1.19
17829--17865
17
2.3
16
90
9
58
51
0
0
48
1.00
17907--17941
18
1.9
18
94
0
61
28
8
11
51
1.67
28503--28532
15
1.9
16
93
6
53
43
0
3
53
1.17
28998--33672
333
14.2
329
77
9
4079
33
14
15
36
1.88
37016--37050
18
2.0
17
88
5
52
31
5
14
48
1.67
38459--38490
12
2.7
12
100
0
64
46
18
15
18
1.84
38517--38551
18
1.9
18
94
0
61
51
11
8
28
1.67
38676--38707
16
2.0
16
93
0
55
46
0
0
53
1.00
38676--38723
18
2.5
19
83
10
62
52
0
0
47
1.00
38749--38827
35
2.3
35
91
2
133
45
17
16
20
1.85
58855--59229
128
2.9
125
94
2
633
43
10
8
38
1.69
61516--61543
13
2.2
13
100
0
56
32
28
7
32
1.84
63514--63542
2
14.5
2
100
0
58
0
0
51
48
1.00
70645--70679
2
17.0
2
94
5
61
48
0
2
48
1.16
76164--76212
21
2.3
22
76
16
59
26
18
26
28
1.98
76282--76344
30
2.1
30
96
0
117
15
25
30
28
1.96
80942--80998
2
29.0
2
92
3
98
49
1
0
49
1.11

Tables:   1

The End!