Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019120.1 Corchorus olitorius cultivar O-4 contig19153, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49677

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3171--3232
19
3.2
20
75
11
58
40
11
4
43
1.62
5016--5099
41
2.0
41
97
0
159
34
11
20
33
1.89
6573--6646
29
2.6
30
89
6
109
44
18
8
28
1.78
23884--23947
3
21.3
3
96
0
119
32
1
0
65
1.02
27282--27343
25
2.5
26
94
5
110
72
20
3
3
1.13
29700--29737
11
3.5
11
85
10
51
57
2
0
39
1.12
30059--30119
31
2.1
31
84
9
83
32
1
9
55
1.42
30478--30686
107
2.0
104
86
7
294
37
10
11
40
1.76
34623--34704
12
6.0
14
72
21
59
56
1
0
42
1.07
42419--42450
7
4.7
7
96
3
57
0
0
9
90
0.45
44465--44540
31
2.5
31
93
0
125
25
21
15
38
1.92
44599--44628
12
2.5
12
100
0
60
26
33
23
16
1.96
45898--45969
28
2.4
31
86
9
105
31
6
26
34
1.83
46549--46587
20
2.0
20
100
0
78
28
20
25
25
1.99

Tables:   1

The End!