genome.fa.s19121.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019121.1 Corchorus olitorius cultivar O-4 contig19154, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  183065

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15374--15413	1	40.0	1	100	0	80	0	0	0	100	0.00
18341--18380	11	3.5	11	96	3	71	65	0	0	35	0.93
19494--19636	64	2.2	67	91	5	229	42	13	9	34	1.77
21620--21649	2	15.0	2	92	0	51	46	0	3	50	1.18
22108--22160	2	25.5	2	90	3	79	47	3	1	47	1.31
22096--22155	18	3.4	18	93	4	97	46	6	3	43	1.46
24149--24403	131	2.0	127	89	7	394	49	1	11	37	1.50
24175--24411	123	1.9	127	86	7	329	49	2	12	35	1.52
29176--29217	16	2.6	16	85	11	50	14	0	21	64	1.29
31813--31849	2	18.5	2	100	0	74	51	0	0	48	1.00
31953--31978	4	6.5	4	100	0	52	23	0	23	53	1.46
31961--32050	47	1.9	47	95	4	164	36	4	12	46	1.61
35066--35240	87	2.0	87	95	0	314	28	23	14	34	1.94
61357--61457	31	3.3	31	69	15	93	39	15	18	25	1.91
61298--61457	60	2.7	60	90	2	243	39	16	17	26	1.91
61336--61428	29	3.1	29	67	17	82	32	19	20	27	1.97
63670--63715	18	2.6	18	89	0	74	17	39	13	30	1.87
64703--64735	16	2.1	16	88	11	50	36	15	6	42	1.71
66894--66949	22	2.4	24	82	14	73	75	3	10	10	1.17
78557--78603	15	3.1	15	75	0	58	31	12	8	46	1.72
91593--91631	2	19.5	2	100	0	78	51	0	0	48	1.00
94434--94459	10	2.6	10	100	0	52	61	7	30	0	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97788--97821	15	2.3	15	100	0	68	79	0	0	20	0.73
98176--98215	20	2.0	20	100	0	80	20	20	25	35	1.96
112395--112647	131	2.0	127	91	6	415	50	1	10	37	1.46
112759--112788	9	3.4	9	90	9	53	43	0	0	56	0.99
112763--112798	17	2.1	17	89	0	54	38	5	0	55	1.23
113381--113458	41	1.9	41	84	5	104	42	12	2	42	1.57
113857--113894	19	2.0	20	89	5	60	42	7	0	50	1.31
114417--114479	33	1.9	33	83	6	83	12	31	36	19	1.89
115251--115288	19	2.0	20	89	5	60	50	18	0	31	1.47
118264--118339	37	2.1	37	89	0	116	36	15	7	39	1.77
119116--119404	142	2.0	142	97	0	551	34	15	11	38	1.84
120915--120985	37	1.9	37	94	0	124	36	16	8	38	1.80
122340--122388	24	2.0	24	92	0	80	59	8	32	0	1.27
124115--124281	54	3.1	54	92	0	271	32	24	8	34	1.85
128819--128954	31	4.4	31	85	0	164	33	27	22	16	1.95
128822--128981	62	2.6	61	80	3	171	34	26	21	16	1.95
133269--133316	2	24.0	2	100	0	96	50	0	0	50	1.00
141245--141303	31	1.9	31	82	6	75	11	18	37	32	1.87
142828--142868	2	20.5	2	100	0	82	48	0	0	51	1.00
144934--144963	16	1.9	16	93	6	53	26	6	6	60	1.47
145225--145353	67	2.0	63	85	10	170	43	6	3	46	1.47
147757--147811	30	1.9	29	82	10	69	45	7	3	43	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
148647--148849	22	9.2	22	71	11	121	39	8	14	37	1.77
148709--148764	23	2.5	22	85	2	76	44	7	10	37	1.67
148929--148955	2	13.5	2	100	0	54	48	0	0	51	1.00
149278--149380	54	1.9	54	95	0	188	30	31	11	27	1.92
150044--150118	37	2.0	37	97	0	141	36	10	12	41	1.77
162715--162964	108	2.3	108	97	0	473	25	19	14	40	1.90
166127--166154	14	2.0	14	100	0	56	35	7	7	50	1.57
172740--172861	59	2.1	59	98	0	235	37	6	17	38	1.76
180844--180881	6	5.6	7	87	12	53	2	0	26	71	1.00
180982--181015	12	2.8	12	86	0	50	76	0	5	17	0.98

Tables:   1

The End!