Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019124.1 Corchorus olitorius cultivar O-4 contig19157, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73933

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
763--787
2
12.5
2
100
0
50
52
48
0
0
1.00
8250--8389
69
2.0
71
91
4
230
40
14
6
39
1.71
17500--17543
2
22.0
2
100
0
88
50
0
0
50
1.00
19739--19775
19
2.0
19
89
5
58
35
0
0
64
0.94
19841--19870
15
2.0
15
100
0
60
33
6
0
60
1.23
26270--26315
23
2.0
23
100
0
92
43
8
17
30
1.79
26406--26478
37
2.0
37
94
0
128
35
15
21
27
1.93
26573--26601
2
14.5
2
100
0
58
48
0
0
51
1.00
29131--29168
2
19.5
2
94
5
69
50
0
0
50
1.00
30924--30963
20
2.0
20
90
0
62
55
17
7
20
1.66
37150--37211
31
2.0
31
84
6
81
35
8
14
41
1.75
55738--55805
22
3.2
23
72
18
65
32
5
19
42
1.75
55903--56029
22
5.8
22
77
9
125
37
11
15
34
1.84
55794--56027
44
5.2
44
72
13
147
38
10
14
36
1.82
56068--56124
22
2.7
21
83
2
69
36
15
8
38
1.79
56111--56189
22
3.7
22
77
3
72
39
11
17
31
1.85
56401--56650
22
11.6
21
75
10
186
36
7
18
37
1.79
56447--56606
85
1.9
87
82
6
209
38
6
18
35
1.78
56444--56620
63
2.7
65
79
10
184
37
6
19
36
1.77
56400--56765
22
16.7
22
66
8
93
35
9
16
38
1.82
56728--56781
22
2.5
22
81
6
65
37
5
16
40
1.72
56400--56792
44
9.0
43
73
7
175
35
8
17
38
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56786--56830
22
1.9
22
82
13
54
44
8
20
26
1.80
56882--56940
22
2.9
20
81
16
68
42
3
8
45
1.51
63618--63653
13
2.7
13
91
4
54
33
5
19
41
1.75
65994--66019
5
5.2
5
100
0
52
0
38
0
61
0.96

Tables:   1

The End!