Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019130.1 Corchorus olitorius cultivar O-4 contig19163, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52037

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
261--317
25
2.4
24
88
5
80
31
5
3
59
1.36
2815--2922
54
2.0
54
100
0
216
31
18
7
42
1.78
5241--5350
31
3.6
32
76
15
101
13
24
24
37
1.92
5336--5376
19
2.2
19
90
0
64
17
24
19
39
1.92
7147--7303
75
2.1
75
96
1
289
34
15
10
39
1.82
7311--7362
26
2.1
24
82
10
61
55
17
3
23
1.58
14505--14949
237
1.9
241
86
7
645
50
11
17
20
1.76
18135--18195
30
2.0
30
83
0
77
26
19
44
9
1.82
20319--20356
19
2.0
19
100
0
76
21
26
26
26
1.99
31558--31619
30
2.1
30
100
0
124
32
16
12
38
1.86
39407--39446
2
20.5
2
85
14
57
50
0
2
47
1.14
39407--39446
9
4.1
10
84
15
57
50
0
2
47
1.14
40872--40899
14
2.0
14
100
0
56
35
14
28
21
1.92
51359--51446
32
2.7
33
84
3
117
35
6
23
34
1.82

Tables:   1

The End!