Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01019132.1 Corchorus olitorius cultivar O-4 contig19165, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 34332
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Found at i:3008 original size:35 final size:35
Alignment explanation
Indices: 2968--3039 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
2958 TTTCATCTGC
2968 AAACAACTTATCACAAAGAGAGAAAAAGAGAGAGA
1 AAACAACTTATCACAAAGAGAGAAAAAGAGAGAGA
*
3003 AAACAACTTATCACAGAGAGAGAAAAAGAGAGAGA
1 AAACAACTTATCACAAAGAGAGAAAAAGAGAGAGA
3038 AA
1 AA
3040 GAGATGGAGC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.60, C:0.11, G:0.21, T:0.08
Consensus pattern (35 bp):
AAACAACTTATCACAAAGAGAGAAAAAGAGAGAGA
Found at i:5309 original size:3 final size:3
Alignment explanation
Indices: 5301--5349 Score: 71
Period size: 3 Copynumber: 16.0 Consensus size: 3
5291 GTGCTTATTA
* *
5301 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTG CTT CTG CTT CTGT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT-T
5347 CTT
1 CTT
5350 TTTAGTATAA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
3 38 0.93
4 3 0.07
ACGTcount: A:0.00, C:0.33, G:0.06, T:0.61
Consensus pattern (3 bp):
CTT
Found at i:7121 original size:14 final size:14
Alignment explanation
Indices: 7085--7145 Score: 61
Period size: 16 Copynumber: 4.1 Consensus size: 14
7075 GTTTTTGAAA
7085 AAAACTCTGTTTTT
1 AAAACTCTGTTTTT
7099 AAAAGACTCTGCTTTTT
1 -AAA-ACTCTG-TTTTT
*
7116 -AAACTCTGTTTTCG
1 AAAACTCTGTTTT-T
7130 AAAACCTCTGTTTTT
1 AAAA-CTCTGTTTTT
7145 A
1 A
7146 CCTGGATTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
13 4 0.10
14 6 0.15
15 9 0.23
16 15 0.38
17 5 0.13
ACGTcount: A:0.28, C:0.18, G:0.10, T:0.44
Consensus pattern (14 bp):
AAAACTCTGTTTTT
Found at i:7139 original size:30 final size:29
Alignment explanation
Indices: 7086--7145 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 29
7076 TTTTTGAAAA
*
7086 AAACTCTGTTTTTAAAAGACTCTGCTTTTT
1 AAACTCTGTTTTGAAAAGACTCTG-TTTTT
*
7116 AAACTCTGTTTTCGAAAA-CCTCTGTTTTT
1 AAACTCTGTTTT-GAAAAGACTCTGTTTTT
7145 A
1 A
7146 CCTGGATTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 6 0.22
30 17 0.63
31 4 0.15
ACGTcount: A:0.27, C:0.18, G:0.10, T:0.45
Consensus pattern (29 bp):
AAACTCTGTTTTGAAAAGACTCTGTTTTT
Found at i:24352 original size:13 final size:13
Alignment explanation
Indices: 24336--24361 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
24326 GAAACTTGCA
24336 CAAAATTGCAATT
1 CAAAATTGCAATT
24349 CAAAATTGCAATT
1 CAAAATTGCAATT
24362 TGGCCTACAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (13 bp):
CAAAATTGCAATT
Found at i:25358 original size:16 final size:16
Alignment explanation
Indices: 25333--25363 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
25323 TGTTCATGGG
*
25333 TCGGGTCGGGCCGGGT
1 TCGGGCCGGGCCGGGT
25349 TCGGGCCGGGCCGGG
1 TCGGGCCGGGCCGGG
25364 CCTTGAGATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.00, C:0.29, G:0.58, T:0.13
Consensus pattern (16 bp):
TCGGGCCGGGCCGGGT
Found at i:26152 original size:25 final size:26
Alignment explanation
Indices: 26116--26166 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
26106 AAGAAACATG
*
26116 ATGTTAATAACATCATG-TTATTATA
1 ATGTTAAGAACATCATGATTATTATA
*
26141 ATGTTAAGAACATGATGATTATTATA
1 ATGTTAAGAACATCATGATTATTATA
26167 TTAATTAAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.41, C:0.06, G:0.12, T:0.41
Consensus pattern (26 bp):
ATGTTAAGAACATCATGATTATTATA
Found at i:27395 original size:21 final size:22
Alignment explanation
Indices: 27355--27397 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
27345 TCATTATTTA
*
27355 TTATTTAAAATATATTTATTAT
1 TTATTTAAAATATATGTATTAT
*
27377 TTATTTAATA-ATATGTATTAT
1 TTATTTAAAATATATGTATTAT
27398 ATCTAAGATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (22 bp):
TTATTTAAAATATATGTATTAT
Found at i:28020 original size:101 final size:95
Alignment explanation
Indices: 27908--28234 Score: 307
Period size: 92 Copynumber: 3.5 Consensus size: 95
27898 GACATGTCCT
*
27908 TATAATATTTTTTATATAATTTGGGGCTAAATCTAAATGATTTAGGACT-AGACT-AAATTCTAA
1 TATAATATTTTTTATATAATTTGGGGCTAAAACTAAATGATTTAGGACTCA-ACTAAAATTCTAA
**
27971 AACCATTGAAATAAATATTTTAAATTTAAGAGA
65 AACCATTGAAATAAATATTTTAAACGTAA-A-A
* * * *
28004 TACCCTAAAATATTTTTTATATAATTTGGGACTAAACCTAACTGATTTCGGACTCAACTAAAATT
1 TA---T--AATATTTTTTATATAATTTGGGGCTAAAACTAAATGATTTAGGACTCAACTAAAATT
* **
28069 CTAAAA-CACTAGAAATAAATATTTTACCCGTAAAA
61 CTAAAACCA-TTGAAATAAATATTTTAAACGTAAAA
* *
28104 TAT--T-TTTTTTATATAATTTGGGGCTAAAACTAAGTGATTTGGGACTCAACTAAAATTCTAAA
1 TATAATATTTTTTATATAATTTGGGGCTAAAACTAAATGATTTAGGACTCAACTAAAATTCTAAA
* * * *
28166 ACCCTAT-AAATAAATATTTT-ACCATTAAA
66 ACCAT-TGAAATAAATATTTTAAACGTAAAA
* * * *
28195 -AT-AT-TTTTTTATAAAATTTGGGACTAAACCTAAGTGATTT
1 TATAATATTTTTTATATAATTTGGGGCTAAAACTAAATGATTT
28235 GGGATAAACT
Statistics
Matches: 199, Mismatches: 21, Indels: 27
0.81 0.09 0.11
Matches are distributed among these distances:
90 2 0.01
91 40 0.20
92 69 0.35
93 2 0.01
96 2 0.01
97 1 0.01
99 1 0.01
100 3 0.02
101 48 0.24
102 31 0.16
ACGTcount: A:0.41, C:0.12, G:0.10, T:0.38
Consensus pattern (95 bp):
TATAATATTTTTTATATAATTTGGGGCTAAAACTAAATGATTTAGGACTCAACTAAAATTCTAAA
ACCATTGAAATAAATATTTTAAACGTAAAA
Found at i:28120 original size:92 final size:90
Alignment explanation
Indices: 28004--28234 Score: 356
Period size: 92 Copynumber: 2.5 Consensus size: 90
27994 ATTTAAGAGA
*
28004 TACCCTAAAATA-TTTTTTATATAATTTGGGACTAAACCTAACTGATTTCGGACTCAACTAAAAT
1 TACCCTAAAATATTTTTTTATATAATTTGGGACTAAACCTAAGTGATTTCGGACTCAACTAAAAT
28068 TCTAAAACACTAGAAATAAATATTT
66 TCTAAAACACTAGAAATAAATATTT
* * *
28093 TACCCGTAAAATATTTTTTTTATATAATTTGGGGCTAAAACTAAGTGATTTGGGACTCAACTAAA
1 TACCC-TAAAATA-TTTTTTTATATAATTTGGGACTAAACCTAAGTGATTTCGGACTCAACTAAA
* *
28158 ATTCTAAAACCCTATAAATAAATATTT
64 ATTCTAAAACACTAGAAATAAATATTT
* *
28185 TACCATTAAAATATTTTTTTATAAAATTTGGGACTAAACCTAAGTGATTT
1 TACC-CTAAAATATTTTTTTATATAATTTGGGACTAAACCTAAGTGATTT
28235 GGGATAAACT
Statistics
Matches: 128, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
89 5 0.04
90 7 0.05
91 34 0.27
92 82 0.64
ACGTcount: A:0.40, C:0.13, G:0.10, T:0.37
Consensus pattern (90 bp):
TACCCTAAAATATTTTTTTATATAATTTGGGACTAAACCTAAGTGATTTCGGACTCAACTAAAAT
TCTAAAACACTAGAAATAAATATTT
Found at i:28257 original size:19 final size:21
Alignment explanation
Indices: 28210--28265 Score: 80
Period size: 20 Copynumber: 2.8 Consensus size: 21
28200 TTTTTATAAA
*
28210 ATTTGGGACTAAACCTAAGTG
1 ATTTGGGACTAAACTTAAGTG
*
28231 ATTTGGGA-TAAACTTAATTG
1 ATTTGGGACTAAACTTAAGTG
28251 A-TTGGGACTAAACTT
1 ATTTGGGACTAAACTT
28266 TTGTAAAAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
19 6 0.19
20 18 0.56
21 8 0.25
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.34
Consensus pattern (21 bp):
ATTTGGGACTAAACTTAAGTG
Found at i:30760 original size:331 final size:332
Alignment explanation
Indices: 29597--31599 Score: 2709
Period size: 331 Copynumber: 6.0 Consensus size: 332
29587 TTTAAGGATA
* * * * * * * *
29597 GACCC-AAAATATTTTTCCTCAATTTTTAGCCACAATACTCATAAAATAAATATAATTCAACTCC
1 GACCCGAAAA-ATTTCTCCTCAATTTTTGGCTAAAATACCCATAAAATATATATAATTTAACGCC
* * *
29661 -AAAAAGAATGGAAGACTTTTCACGCTTTTAATATCGTTTTCCATATTTTTCTGAATTAATTTCT
65 AAAAAAGATTGGAGGACTTTTCACGCTTTTAATATCGTTTTTCATATTTTTCTGAATTAATTTCT
* * * *
29725 AATTAAATCAAAACAAGATTCAGATGCTCGTAAAAACAAATCATTAAATTCAAATGTGGCTGAGA
130 AATTAAATCGAAACAAGATTCAGATGCTCGTATAAACAAATCCTTAAATGC-AATGTGGCTGAGA
* * * * * * * *
29790 TTCGATTAGATTAGTATAGATATTTCAAGGAGT-TCAGGCGCCAGAAATCATGCAAAACTAAGTC
194 TTTGATTAGATGATTATAGATATTTCAAGGAATCTCA-ACGCCAAAAATCATGCAAAACTGAGCC
* * * *
29854 GGGGCCCCGAAACGCG-TTTTAGCCAAAAATCGTGATGGTTAGTACACGATTCCAGCTTAAATTT
258 GGAGCCCCAAAACGCGTTTTTAGCAAAAAACCGTGATGGTTAGTACACGATTCCAGCTTAAATTT
*
29918 TGAAGAAAAT
323 TGCAGAAAAT
* * *
29928 GACCCGAAAAATTTCCCCTCAATTTTGGGCTAAAATACCCATAAAATATATATAATTTAACTCCA
1 GACCCGAAAAATTTCTCCTCAATTTTTGGCTAAAATACCCATAAAATATATATAATTTAACGCCA
* *
29993 AAAAGGATTGAAGGACTTTTCACGCTTTTAATATCGTTTTTCATATTTTTCTGAATTAATTTCTA
66 AAAAAGATTGGAGGACTTTTCACGCTTTTAATATCGTTTTTCATATTTTTCTGAATTAATTTCTA
* * *
30058 ATTAAATCGAAACAAGATTTAGATGCTCGTATAAACAAATCCTTAAATGCAAAGTGACTGAGATT
131 ATTAAATCGAAACAAGATTCAGATGCTCGTATAAACAAATCCTTAAATGCAATGTGGCTGAGATT
30123 TGATTAGATGATTATAGATATTTCAAGGAATCTCAACGCCAAAAATCATGCAAAACTGAGCCGGA
196 TGATTAGATGATTATAGATATTTCAAGGAATCTCAACGCCAAAAATCATGCAAAACTGAGCCGGA
* *
30188 ACCCCAAAACGCGTTTTTAGCAAAAAACCGTGAT-G---GTACACGATTCCAGCTTAGATTTTGC
261 GCCCCAAAACGCGTTTTTAGCAAAAAACCGTGATGGTTAGTACACGATTCCAGCTTAAATTTTGC
30249 AGAAAAT
326 AGAAAAT
* * * ** *
30256 GACCCGAAAAATTTCTCCTCAAATTCTGGATAAAATAAACATAAAATATATATAATTTAACGCCG
1 GACCCGAAAAATTTCTCCTCAATTTTTGGCTAAAATACCCATAAAATATATATAATTTAACGCCA
* ** * *
30321 AAAAGGATTACAGGACTTTTCACGCTTTTAATCTCGTTTTTCATATTATTCTGAATTAATTTCTA
66 AAAAAGATTGGAGGACTTTTCACGCTTTTAATATCGTTTTTCATATTTTTCTGAATTAATTTCTA
*
30386 ATTAAATCGAAACAAGATTCAGATGCTTGTATAAACAAATCCTTAAATGCAATGTGGCTGAGATT
131 ATTAAATCGAAACAAGATTCAGATGCTCGTATAAACAAATCCTTAAATGCAATGTGGCTGAGATT
*
30451 TGATTAGATGATTATAGATATTTCAAGGAATCTCAACGCCAAAAATTATGCAAAACTGAGCCGGA
196 TGATTAGATGATTATAGATATTTCAAGGAATCTCAACGCCAAAAATCATGCAAAACTGAGCCGGA
* * * * * *
30516 GTCCAAAAACGCGTTTTTAGCAAAAAACCGTGATAGTTAGTACATGATTGCAGCTTAGATTTTGC
261 GCCCCAAAACGCGTTTTTAGCAAAAAACCGTGATGGTTAGTACACGATTCCAGCTTAAATTTTGC
30581 AGAAAAT
326 AGAAAAT
* *
30588 GACCC-AAAAATTTCTCCTCAATTTATGGCTAAAATACCCATAATATATATATAATTTAACGCCA
1 GACCCGAAAAATTTCTCCTCAATTTTTGGCTAAAATACCCATAAAATATATATAATTTAACGCCA
* *
30652 AAAAAGATTGGAGGACTTTTCACGCTTTTAATATCGTTTTTCAAATTTTTCTAAATTAATTTCTA
66 AAAAAGATTGGAGGACTTTTCACGCTTTTAATATCGTTTTTCATATTTTTCTGAATTAATTTCTA
* *
30717 ATTAAATCGAAACAAGATTCAGATGCTCGTATAAACGAATCCTTAAATGCAATTTGGCTGAGATT
131 ATTAAATCGAAACAAGATTCAGATGCTCGTATAAACAAATCCTTAAATGCAATGTGGCTGAGATT
*
30782 TGATTAGATGATTATAGATAATTCAAGGAATCTCAACGCCAAAAATCATGCAAAACTGAGCCGGA
196 TGATTAGATGATTATAGATATTTCAAGGAATCTCAACGCCAAAAATCATGCAAAACTGAGCCGGA
* * * * *
30847 GCCCCAAAACGCGTTTTTAGCAAAAAAAAAACGTGATGGTTAGTACACGATTTCGGGTAAAATTT
261 GCCCCAAAACGCGTTTTTAGC---AAAAAACCGTGATGGTTAGTACACGATTCCAGCTTAAATTT
*
30912 TGCAAAAAAT
323 TGCAGAAAAT
* * * *** *
30922 GCCCCGAAAAATTTTTCTTCAATTTTTGGCTAAAATAATAATGAAATATATATAATTTAACGCC-
1 GACCCGAAAAATTTCTCCTCAATTTTTGGCTAAAATACCCATAAAATATATATAATTTAACGCCA
* * ** *
30986 AAAAAGGTTGAAGGACTTTTCGTGCTTTTCATATCGTTTTTCATATTTTTCTGAATTAATTTCTA
66 AAAAAGATTGGAGGACTTTTCACGCTTTTAATATCGTTTTTCATATTTTTCTGAATTAATTTCTA
* * * * * * * * ***
31051 AATAATTCAAAACAAGATTCAAATGCTTGTAAAAACAAATCTTTAAATTCAAATGTCATTGAGAT
131 ATTAAATCGAAACAAGATTCAGATGCTCGTATAAACAAATCCTTAAATGC-AATGTGGCTGAGAT
* * * * *
31116 TTGATTAGATAAATATAGATATTTCAAGGAGTCTTTGTC-TCGGCGCAAAAAATAATGCAAAACT
195 TTGATTAGATGATTATAGATATTTCAAGGAATC----TCAAC-GC-C-AAAAATCATGCAAAACT
* * ** * *
31180 AAGCCGGGGCCCGGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTCCAGATTA
253 GAGCCGGAGCCCCAAAACGCGTTTTTAGCAAAAAACCGTGATGGTTAGTACACGATTCCAGCTTA
*
31245 GATTTTGCAGAAAAT
318 AATTTTGCAGAAAAT
*
31260 GACCCGAAAAATTACTCCTCAATTTTTGGCTAAAATACCCATAAAATATATATAATTTAACGCCA
1 GACCCGAAAAATTTCTCCTCAATTTTTGGCTAAAATACCCATAAAATATATATAATTTAACGCCA
**
31325 AAAAAGATTGGAGGACTTTTCACGCTTTTAATATCCATTTTCATATTTTTCTGAATTAATTTCTA
66 AAAAAGATTGGAGGACTTTTCACGCTTTTAATATCGTTTTTCATATTTTTCTGAATTAATTTCTA
* * *
31390 ATTAAAACGAAACAAGATTCAGATGCTCGTATAAACGACTCCTTAAATGCAATGTGGCTGAGATT
131 ATTAAATCGAAACAAGATTCAGATGCTCGTATAAACAAATCCTTAAATGCAATGTGGCTGAGATT
* * *
31455 TGATTAGATGGTTATAGATATTTCAAGGAATCTCAAGGCCAAAAATCATGCAAAATTGAGCC-GA
196 TGATTAGATGATTATAGATATTTCAAGGAATCTCAACGCCAAAAATCATGCAAAACTGAGCCGGA
* * * * *
31519 GCCCCAAAACGCGTTTTTAGCAAAAAACCGTGATAGTTAGTATACGATTTCGGCTAAAATTTTGC
261 GCCCCAAAACGCGTTTTTAGCAAAAAACCGTGATGGTTAGTACACGATTCCAGCTTAAATTTTGC
*
31584 AAAAAAT
326 AGAAAAT
31591 GACCC-AAAA
1 GACCCGAAAA
31600 TTTTTCTGAA
Statistics
Matches: 1464, Mismatches: 186, Indels: 45
0.86 0.11 0.03
Matches are distributed among these distances:
328 304 0.21
329 1 0.00
330 4 0.00
331 448 0.31
332 185 0.13
333 1 0.00
334 149 0.10
335 89 0.06
338 140 0.10
339 101 0.07
340 1 0.00
341 41 0.03
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.31
Consensus pattern (332 bp):
GACCCGAAAAATTTCTCCTCAATTTTTGGCTAAAATACCCATAAAATATATATAATTTAACGCCA
AAAAAGATTGGAGGACTTTTCACGCTTTTAATATCGTTTTTCATATTTTTCTGAATTAATTTCTA
ATTAAATCGAAACAAGATTCAGATGCTCGTATAAACAAATCCTTAAATGCAATGTGGCTGAGATT
TGATTAGATGATTATAGATATTTCAAGGAATCTCAACGCCAAAAATCATGCAAAACTGAGCCGGA
GCCCCAAAACGCGTTTTTAGCAAAAAACCGTGATGGTTAGTACACGATTCCAGCTTAAATTTTGC
AGAAAAT
Found at i:30870 original size:659 final size:661
Alignment explanation
Indices: 29637--31599 Score: 2834
Period size: 659 Copynumber: 3.0 Consensus size: 661
29627 CACAATACTC
* * * * *
29637 ATAAAATAAATATAATTCAACTCCAAAAAGAATGGAA-GACTTTTCACGCTTTTAATATCGTTTT
1 ATAAAATATATATAATTTAACGCCAAAAAG-GTTGAAGGACTTTTCACGCTTTTAATATCGTTTT
* *
29701 CCATATTTTTCTGAATTAATTTCTAATTAAATCAAAACAAGATTCAGATGCTCGTAAAAACAAAT
65 TCATATTTTTCTGAATTAATTTCTAATTAAATCAAAACAAGATTCAGATGCTTGTAAAAACAAAT
* * * *
29766 CATTAAATTCAAATGTGGCTGAGATTCGATTAGATTAGTATAGATATTTCAAGGAGT-TCAGGCG
130 CATTAAATTCAAATGTGGCTGAGATTTGATTAGATAAATATAGATATTTCAAGGAGTCTCA-ACG
* * * * *
29830 CCAGAAATCATGCAAAACTAAGTCGGGGCCCCGAAACGCG-TTTTAGCCAAAAATCGTGATGGTT
194 CCAAAAATAATGCAAAACTAAGCCGGGGCCCAGAAACGCGTTTTTAGCCAAAAACCGTGATGGTT
* * *
29894 AGTACACGATTCCAGCTTAAATTTTGAAGAAAATGACCCGAAAAATTTCCCCTCAATTTTGGGCT
259 AGTACACGATTCCAGCTTAGATTTTGCAGAAAATGACCCGAAAAATTTCTCCTCAATTTT-GGCT
* * *
29959 AAAATACCCATAAAATATATATAATTTAACTCCAAAAAGGATTGAAGGACTTTTCACGCTTTTAA
323 AAAATACCCATAAAATATATATAATTTAACGCCAAAAAAGATTGGAGGACTTTTCACGCTTTTAA
*
30024 TATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTTAGATGCTCGTA
388 TATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTA
* * *
30089 TAAACAAATCCTTAAATGCAAAGTGACTGAGATTTGATTAGATGATTATAGATATTTCAAGGAAT
453 TAAACGAATCCTTAAATGCAATGTGGCTGAGATTTGATTAGATGATTATAGATATTTCAAGGAAT
*
30154 CTCAACGCCAAAAATCATGCAAAACTGAGCCGGAACCCCAAAACGCGTTTTTAGCAAAAAACCGT
518 CTCAACGCCAAAAATCATGCAAAACTGAGCCGGAGCCCCAAAACGCGTTTTTAGCAAAAAACCGT
* * *
30219 GAT-G-GTACACGATTCCAGCTTAGATTTTGCAGAAAATGACCCGAAAAATTTCTCCTCAAATTC
583 GATGGTGTACACGATTCCAGCTAAAATTTTGCAAAAAATGACCCGAAAAATTTCTCCTCAAATTC
30282 TGGATAAAATAA-A
648 TGGATAAAATAATA
* *
30295 CATAAAATATATATAATTTAACGCCGAAAAGGATT-ACAGGACTTTTCACGCTTTTAATCTCGTT
1 -ATAAAATATATATAATTTAACGCCAAAAAGG-TTGA-AGGACTTTTCACGCTTTTAATATCGTT
* * *
30359 TTTCATATTATTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTTGTATAAACAA
63 TTTCATATTTTTCTGAATTAATTTCTAATTAAATCAAAACAAGATTCAGATGCTTGTAAAAACAA
* * * * *
30424 ATCCTTAAATGC-AATGTGGCTGAGATTTGATTAGATGATTATAGATATTTCAAGGAATCTCAAC
128 ATCATTAAATTCAAATGTGGCTGAGATTTGATTAGATAAATATAGATATTTCAAGGAGTCTCAAC
* * * * * * *
30488 GCCAAAAATTATGCAAAACTGAGCCGGAGTCCAAAAACGCGTTTTTAGCAAAAAACCGTGATAGT
193 GCCAAAAATAATGCAAAACTAAGCCGGGGCCCAGAAACGCGTTTTTAGCCAAAAACCGTGATGGT
* *
30553 TAGTACATGATTGCAGCTTAGATTTTGCAGAAAATGACCC-AAAAATTTCTCCTCAATTTATGGC
258 TAGTACACGATTCCAGCTTAGATTTTGCAGAAAATGACCCGAAAAATTTCTCCTCAATTT-TGGC
*
30617 TAAAATACCCATAATATATATATAATTTAACGCCAAAAAAGATTGGAGGACTTTTCACGCTTTTA
322 TAAAATACCCATAAAATATATATAATTTAACGCCAAAAAAGATTGGAGGACTTTTCACGCTTTTA
* *
30682 ATATCGTTTTTCAAATTTTTCTAAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGT
387 ATATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGT
* *
30747 ATAAACGAATCCTTAAATGCAATTTGGCTGAGATTTGATTAGATGATTATAGATAATTCAAGGAA
452 ATAAACGAATCCTTAAATGCAATGTGGCTGAGATTTGATTAGATGATTATAGATATTTCAAGGAA
30812 TCTCAACGCCAAAAATCATGCAAAACTGAGCCGGAGCCCCAAAACGCGTTTTTAGCAAAAAAAAA
517 TCTCAACGCCAAAAATCATGCAAAACTGAGCCGGAGCCCCAAAACGCGTTTTTAGC---AAAAAA
* * * * * * *
30877 ACGTGATGGTTAGTACACGATTTCGGGTAAAATTTTGCAAAAAATGCCCCGAAAAATTTTTCTTC
579 CCGTGATGG-T-GTACACGATTCCAGCTAAAATTTTGCAAAAAATGACCCGAAAAATTTCTCCTC
* * *
30942 AATTTTTGGCTAAAATAATA
642 AAATTCTGGATAAAATAATA
* ** *
30962 ATGAAATATATATAATTTAACGCCAAAAAGGTTGAAGGACTTTTCGTGCTTTTCATATCGTTTTT
1 ATAAAATATATATAATTTAACGCCAAAAAGGTTGAAGGACTTTTCACGCTTTTAATATCGTTTTT
* * *
31027 CATATTTTTCTGAATTAATTTCTAAATAATTCAAAACAAGATTCAAATGCTTGTAAAAACAAATC
66 CATATTTTTCTGAATTAATTTCTAATTAAATCAAAACAAGATTCAGATGCTTGTAAAAACAAATC
* *** *
31092 TTTAAATTCAAATGTCATTGAGATTTGATTAGATAAATATAGATATTTCAAGGAGTCTTTGTC-T
131 ATTAAATTCAAATGTGGCTGAGATTTGATTAGATAAATATAGATATTTCAAGGAGTC----TCAA
*
31156 CGGCGCAAAAAATAATGCAAAACTAAGCCGGGGCCCGGAAACGCGTTTTTAGCCAAAAACCGTGA
192 C-GC-C-AAAAATAATGCAAAACTAAGCCGGGGCCCAGAAACGCGTTTTTAGCCAAAAACCGTGA
* *
31221 TGGTTAGTACACGATTCCAGATTAGATTTTGCAGAAAATGACCCGAAAAATTACTCCTCAATTTT
254 TGGTTAGTACACGATTCCAGCTTAGATTTTGCAGAAAATGACCCGAAAAATTTCTCCTCAA-TTT
31286 TGGCTAAAATACCCATAAAATATATATAATTTAACGCCAAAAAAGATTGGAGGACTTTTCACGCT
318 TGGCTAAAATACCCATAAAATATATATAATTTAACGCCAAAAAAGATTGGAGGACTTTTCACGCT
** *
31351 TTTAATATCCATTTTCATATTTTTCTGAATTAATTTCTAATTAAAACGAAACAAGATTCAGATGC
383 TTTAATATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGC
* *
31416 TCGTATAAACGACTCCTTAAATGCAATGTGGCTGAGATTTGATTAGATGGTTATAGATATTTCAA
448 TCGTATAAACGAATCCTTAAATGCAATGTGGCTGAGATTTGATTAGATGATTATAGATATTTCAA
* *
31481 GGAATCTCAAGGCCAAAAATCATGCAAAATTGAGCC-GAGCCCCAAAACGCGTTTTTAGCAAAAA
513 GGAATCTCAACGCCAAAAATCATGCAAAACTGAGCCGGAGCCCCAAAACGCGTTTTTAGCAAAAA
* * * *
31545 ACCGTGATAGTTAGTATACGATTTCGGCTAAAATTTTGCAAAAAATGACCC-AAAA
578 ACCGTGAT-GGT-GTACACGATTCCAGCTAAAATTTTGCAAAAAATGACCCGAAAA
31600 TTTTTCTGAA
Statistics
Matches: 1167, Mismatches: 111, Indels: 43
0.88 0.08 0.03
Matches are distributed among these distances:
658 1 0.00
659 363 0.31
660 154 0.13
662 12 0.01
663 1 0.00
665 94 0.08
666 130 0.11
667 1 0.00
668 4 0.00
669 50 0.04
670 5 0.00
671 1 0.00
672 114 0.10
673 234 0.20
674 3 0.00
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.31
Consensus pattern (661 bp):
ATAAAATATATATAATTTAACGCCAAAAAGGTTGAAGGACTTTTCACGCTTTTAATATCGTTTTT
CATATTTTTCTGAATTAATTTCTAATTAAATCAAAACAAGATTCAGATGCTTGTAAAAACAAATC
ATTAAATTCAAATGTGGCTGAGATTTGATTAGATAAATATAGATATTTCAAGGAGTCTCAACGCC
AAAAATAATGCAAAACTAAGCCGGGGCCCAGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAG
TACACGATTCCAGCTTAGATTTTGCAGAAAATGACCCGAAAAATTTCTCCTCAATTTTGGCTAAA
ATACCCATAAAATATATATAATTTAACGCCAAAAAAGATTGGAGGACTTTTCACGCTTTTAATAT
CGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTATAA
ACGAATCCTTAAATGCAATGTGGCTGAGATTTGATTAGATGATTATAGATATTTCAAGGAATCTC
AACGCCAAAAATCATGCAAAACTGAGCCGGAGCCCCAAAACGCGTTTTTAGCAAAAAACCGTGAT
GGTGTACACGATTCCAGCTAAAATTTTGCAAAAAATGACCCGAAAAATTTCTCCTCAAATTCTGG
ATAAAATAATA
Found at i:31798 original size:238 final size:230
Alignment explanation
Indices: 31369--31832 Score: 541
Period size: 238 Copynumber: 2.0 Consensus size: 230
31359 CCATTTTCAT
* * * * * *
31369 ATTTTTCTGAATTAATTTCTAATTAAAACGAAACAAGATTCAGATGCTCGTATAAACGACTCCTT
1 ATTTTTCTGAATTAATTTCTAATTAAAACAAAACAAAATTCAAATGCTCGTAAAAACAAATCCTT
* *** *
31434 AAATGCAATGTGGCTGAGATTTGATTAGATGGTTATAGATATTTCAAGGAATCTCAAGGCCAAAA
66 AAATGCAATGTAGCTGAGATTTGATTAGATAAATATAAATATTTCAAGGAATCTCAAGGCCAAAA
** * * *
31499 ATCATGCAAAATTGAGCCGAGCCCCAAAACGCGTTTTTAGCAAAAAACCGTGATAGTTAGTATAC
131 AAAATGCAAAACTAAGCCGAGCCCCAAAACGCGTTTTTAGCAAAAAACCGTGATAGTTAGTACAC
* *
31564 GATTTCGGCTAAAATTTTGCAAAAAATGACCCAAA
196 GATTCCAGCTAAAATTTTGCAAAAAATGACCCAAA
* * *
31599 ATTTTTCTGAATTAATTTCTAATTGAATCAAAACAAAATTCAAATGCTCGTAAAAACAAATCTTT
1 ATTTTTCTGAATTAATTTCTAATTAAAACAAAACAAAATTCAAATGCTCGTAAAAACAAATCCTT
* * * **
31664 AAATTCAAATGTAGCTGAGATTTGATTTGATAAATATAAATATTTCAAGGAGTCTTGGTCTCGGC
66 AAATGC-AATGTAGCTGAGATTTGATTAGATAAATATAAATATTTCAAGGAATC----TCAAGGC
* * ** * *
31729 GCAGAAAAAAATGCAAAACTAAGTCGGGGCCCGGAAACGCGTTTTTAGCCAAAAACCGTGATTGT
126 -CA-AAAAAAATGCAAAACTAAG-CCGAGCCCCAAAACGCGTTTTTAGCAAAAAACCGTGATAGT
* * *
31794 TAGTACACGATTCCAGCTTAGATTTTGCAGAAAATGACC
188 TAGTACACGATTCCAGCTAAAATTTTGCAAAAAATGACC
31833 AGAAAAATTT
Statistics
Matches: 191, Mismatches: 35, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
230 61 0.32
231 40 0.21
235 5 0.03
236 2 0.01
237 15 0.08
238 68 0.36
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (230 bp):
ATTTTTCTGAATTAATTTCTAATTAAAACAAAACAAAATTCAAATGCTCGTAAAAACAAATCCTT
AAATGCAATGTAGCTGAGATTTGATTAGATAAATATAAATATTTCAAGGAATCTCAAGGCCAAAA
AAAATGCAAAACTAAGCCGAGCCCCAAAACGCGTTTTTAGCAAAAAACCGTGATAGTTAGTACAC
GATTCCAGCTAAAATTTTGCAAAAAATGACCCAAA
Found at i:32886 original size:672 final size:670
Alignment explanation
Indices: 31599--34332 Score: 4342
Period size: 669 Copynumber: 4.1 Consensus size: 670
31589 ATGACCCAAA
*
31599 ATTTTTCTGAATTAATTTCTAATTGAATCAAAACAAAATTCAAATGCTCGTAAAAACAAATCTTT
1 ATTTTTCTGAATTAATTTCTAATTGAATCAAAACAAGATTCAAATGCTCGTAAAAACAAATCTTT
* *
31664 AAATTCAAATGTAGCTGAGATTTGATTTGATAAATATAAATATTTCAAGGAGTCTTGGTCTCGGC
66 AAATTCAAATGTAGCTGAGATTTGATTAGATAAATATAAATATTTCAAAGAGTCTTGGTCTCGGC
* *
31729 GCAGAAAAA-AATGCAAAACTAAGTCGGGGCCCGGAAACGCGTTTTTAGCCAAAAACCGTGATTG
131 GCA-AAAAATAATGCAAAACTAAGCCGGGGCCCGGAAACGCGTTTTTAGCCAAAAACCGTGATGG
31793 TTAGTACACGATTCCAGCTTAGATTTTGCAGAAAATGACCAGAAAAATTTCCCCTCAATTTTTGG
195 TTAGTACACGATTCCAGCTTAGATTTTGCAGAAAATGACCAGAAAAATTTCCCCTCAATTTTTGG
*
31858 CTAAAATACCCATAAAATATATATAATTTAGCTCCAAAAAGGATTGGAGGACTTTTCACGCTTTT
260 CTAAAATACCCATAAAATATATATAATTTAACTCCAAAAAGGATTGGAGGACTTTTCACGCTTTT
*
31923 AATATCGTTTTTCATATTTTTCTAAATTAATTTCTAATTAAAACGAAAGAAGGTTCAGATGCTCG
325 AATATCGTTTTTCATATTTTTCTAAATTAATTTCTAATTAAAACGAAACAAGGTTCAGATGCTCG
31988 TATAAACGAATCCTTAAATGCAATGTGGCTGAGAATTGATTAGATGATTATAGATATTTCAAGGA
390 TATAAACGAATCCTTAAATGCAATGTGGCTGAGAATTGATTAGATGATTATAGATATTTCAAGGA
*
32053 ATCTCAACGCCAAAAATCATGCAAAACTGAGCCGTAGCCCCGAAACGCGTTTTTAGCAAAAAAAA
455 ATCTCAACGCCAAAAATCATGCAAAACTGAGCCG-AGCCCCAAAACGCGTTTTTAGC-AAAAAAA
32118 ACGTGATGGTTAGTACACGATTTCGGGTAAAATTTTGCAAAAAATGCCCCGAAAAATTTTTCTTC
518 ACGTGATGGTTAGTACACGATTTCGGGTAAAATTTTGCAAAAAATGCCCCGAAAAATTTTTCTTC
* *
32183 AATTTTTGGCTAAAATACTCATGAAATATATATAATATAACACCAAAAAGGTTTAAGGACTTTTC
583 AATTTTTGGCTAAAATACTCATGAAATATATATAATTTAACACCAAAAAGGTTGAAGGACTTTTC
* *
32248 GTGCTTTTCATTTCGTTTTTCAT
648 GTGCTTTTCATATCCTTTTTCAT
* *
32271 ATTTTTCTGAATTAATTTCTAAAT-AATTCAAAACAAGATTCAAATGCTTGTAAAAACAAATCTT
1 ATTTTTCTGAATTAATTTCTAATTGAA-TCAAAACAAGATTCAAATGCTCGTAAAAACAAATCTT
* * *
32335 TAAATTCAAATGTAGCTGAGATTTGATTAGATAAATATAGATATTTCAAAGAGTCTTTGTCTCAG
65 TAAATTCAAATGTAGCTGAGATTTGATTAGATAAATATAAATATTTCAAAGAGTCTTGGTCTCGG
* **
32400 CGCAAAAAATAATGCAAAACTTAGCCGGGGCCCATAAACGCGTTTTTAGCCAAAAACCGTGATGG
130 CGCAAAAAATAATGCAAAACTAAGCCGGGGCCCGGAAACGCGTTTTTAGCCAAAAACCGTGATGG
* * *
32465 TTAGTACACGATTCTAGTTTAGATTTTGCAGAAAATGACCAAAAAAATTTCCCCTCAATTTTTGG
195 TTAGTACACGATTCCAGCTTAGATTTTGCAGAAAATGACCAGAAAAATTTCCCCTCAATTTTTGG
* *
32530 CTAAAATACCCATAAAATATATATAATTTAACTCTAAAAAGGATTGGAGGACTTTTCACGTTTTT
260 CTAAAATACCCATAAAATATATATAATTTAACTCCAAAAAGGATTGGAGGACTTTTCACGCTTTT
* * *
32595 AATATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAAACGAAAGAAGGTTCAGATACTCG
325 AATATCGTTTTTCATATTTTTCTAAATTAATTTCTAATTAAAACGAAACAAGGTTCAGATGCTCG
*
32660 TATAAACGAATCCTTAAATACAATGTGGCTGAGAATTGATTAGATGATTATAGATATTTCAAGGA
390 TATAAACGAATCCTTAAATGCAATGTGGCTGAGAATTGATTAGATGATTATAGATATTTCAAGGA
32725 ATCTCAACGCCAAAAATCATGCAAAACTGAGCCGAGCCCCAAAACGCGTTTTTAGCAAAAAAAAA
455 ATCTCAACGCCAAAAATCATGCAAAACTGAGCCGAGCCCCAAAACGCGTTTTTAGC-AAAAAAAA
32790 CGTGATGGTTAGTACACGATTTCGGGTAAAATTTTG-AAAAAATGCCCC-ATAAAATTTTTCTTC
519 CGTGATGGTTAGTACACGATTTCGGGTAAAATTTTGCAAAAAATGCCCCGA-AAAATTTTTCTTC
* *
32853 TATTTTTGGCTAAAATACTAATGAAATATATATAATTTAACTA--AAAAAGGTTGAAGGACTTTT
583 AATTTTTGGCTAAAATACTCATGAAATATATATAATTTAAC-ACCAAAAAGGTTGAAGGACTTTT
* *
32916 TGTGCTTTTCATATCGTTTTTCAT
647 CGTGCTTTTCATATCCTTTTTCAT
* * * * *
32940 ATTTTTCAGAATTAATTTCTAATT-AATTCAAAACAAGATTCAAATACTTGTTAAAACAAATATT
1 ATTTTTCTGAATTAATTTCTAATTGAA-TCAAAACAAGATTCAAATGCTCGTAAAAACAAATCTT
* * * *
33004 TAAATTCAAATGTCGCTGAGATTTGAATAGATAAATATAAATATTTCAAAGAGTCTTTGTCTTGG
65 TAAATTCAAATGTAGCTGAGATTTGATTAGATAAATATAAATATTTCAAAGAGTCTTGGTCTCGG
* * *
33069 CGCAAAAAATAATGCAAAACTAAGCCGGGGCCCGGAAATGCGTTTTTAGTCAAAAATCGTGATGG
130 CGCAAAAAATAATGCAAAACTAAGCCGGGGCCCGGAAACGCGTTTTTAGCCAAAAACCGTGATGG
* * * *
33134 TTAGTACATGATTCCAGCTTTGATTTTGCAGAAAATGACCTGAAAAATTTCTCCTCAATTTTTGG
195 TTAGTACACGATTCCAGCTTAGATTTTGCAGAAAATGACCAGAAAAATTTCCCCTCAATTTTTGG
* *
33199 CTAAAATACCCATAAAATATATATAATTTAACGCCAAAAAAGATTGGAGGACTTTTCACGCTTTT
260 CTAAAATACCCATAAAATATATATAATTTAACTCCAAAAAGGATTGGAGGACTTTTCACGCTTTT
* * *
33264 AATATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTTAAACGAAACAAGGTTCAGTTGCTCG
325 AATATCGTTTTTCATATTTTTCTAAATTAATTTCTAATTAAAACGAAACAAGGTTCAGATGCTCG
* *
33329 TATAAACGAATCCTTAAATGCAATGTGGCTGAGATTTGATTAGATGATTATATA-ATTTCCAAGG
390 TATAAACGAATCCTTAAATGCAATGTGGCTGAGAATTGATTAGATGATTATAGATATTT-CAAGG
* * *
33393 AATCTCAACGCCAAAAATCATGCAAAACTGAGCCGATCCCCAAAACGCGTTTTTAGCAAAAATAT
454 AATCTCAACGCCAAAAATCATGCAAAACTGAGCCGAGCCCCAAAACGCGTTTTTAGCAAAAAAAA
* * *
33458 CGTGATGGTTAATACACAATTTCGGGTAAAATTTTGCAAAAAATGCCCCGAAATATTTTTCTTCA
519 CGTGATGGTTAGTACACGATTTCGGGTAAAATTTTGCAAAAAATGCCCCGAAAAATTTTTCTTCA
* * *
33523 ATTTTTGACTAAAATACTCATGAAA-ATTATATAATTTAACGCTAAAAAGGTTGAAGGACTTTTC
584 ATTTTTGGCTAAAATACTCATGAAATA-TATATAATTTAACACCAAAAAGGTTGAAGGACTTTTC
33587 GTGCTTTTCATATCCTTTTTCAT
648 GTGCTTTTCATATCCTTTTTCAT
* *
33610 ATTTTTCTAAATTAATTTCTAATTGAATCAAAACAAGATTCAAATGCTCGTCAAAACAAATCTTT
1 ATTTTTCTGAATTAATTTCTAATTGAATCAAAACAAGATTCAAATGCTCGTAAAAACAAATCTTT
* * ** * *
33675 AAATTCAAATGTAGCTGATATTTGATTACATAAATATTGATATTTCAAGGAGTCTTGGTCTCGGA
66 AAATTCAAATGTAGCTGAGATTTGATTAGATAAATATAAATATTTCAAAGAGTCTTGGTCTCGGC
* * * *
33740 GCAGAAAATAATGCAAAACTAAGCAGGGGCTCGGAAACGCGTTTTTAACCAAAAACCGTG-TGGT
131 GCAAAAAATAATGCAAAACTAAGCCGGGGCCCGGAAACGCGTTTTTAGCCAAAAACCGTGATGGT
* * * * **
33804 TAGTACACGATTCCAGCTTAAATTTTGCAGAAAATAACCCGAGAAATTTGTCCTCAATTTTTGGC
196 TAGTACACGATTCCAGCTTAGATTTTGCAGAAAATGACCAGAAAAATTTCCCCTCAATTTTTGGC
* * *
33869 TAAAATACCCATAAAATATTTACAATTTAACTCCAAAAAGGATTGGAGGACTTTTAACGCTTTTA
261 TAAAATACCCATAAAATATATATAATTTAACTCCAAAAAGGATTGGAGGACTTTTCACGCTTTTA
* * *
33934 ATATCGTTTTTCATATTTTTCTAAACTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGT
326 ATATCGTTTTTCATATTTTTCTAAATTAATTTCTAATTAAAACGAAACAAGGTTCAGATGCTCGT
* *
33999 ATAAACGAATCCTTAAATGCAATGTGGCTGAGATTTGATTAGATGATTACAGATATTTCAAGGAA
391 ATAAACGAATCCTTAAATGCAATGTGGCTGAGAATTGATTAGATGATTATAGATATTTCAAGGAA
* * *
34064 TCTCAACGCCAAAAATCATGCAAAACTGAGCCGAGCTCCAAAACACGTTTTTAGC-AAAAAACCG
456 TCTCAACGCCAAAAATCATGCAAAACTGAGCCGAGCCCCAAAACGCGTTTTTAGCAAAAAAAACG
* * * * ** *
34128 TGATGGTTAGTACACGATTTCGGCTAAAATTTTACAGAAAATGACCC-AAATTTTTTTTCTTTAA
521 TGATGGTTAGTACACGATTTCGGGTAAAATTTTGCAAAAAATGCCCCGAAA-AATTTTTCTTCAA
* *
34192 TTTATGGCTAAAATACTCATGAAATATATATAATTT-ACACCAAAAAGGTTGAAGGACTTTTCGC
585 TTTTTGGCTAAAATACTCATGAAATATATATAATTTAACACCAAAAAGGTTGAAGGACTTTTCGT
34256 GCTTTTCATATCCTTTTTCAT
650 GCTTTTCATATCCTTTTTCAT
*
34277 ATTTTTCTAAATTAATTTCTAATTGAATCAAAACAAGATTCAAATGCTCGTAAAAA
1 ATTTTTCTGAATTAATTTCTAATTGAATCAAAACAAGATTCAAATGCTCGTAAAAA
Statistics
Matches: 1911, Mismatches: 137, Indels: 33
0.92 0.07 0.02
Matches are distributed among these distances:
667 104 0.05
668 136 0.07
669 864 0.45
670 274 0.14
671 76 0.04
672 457 0.24
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (670 bp):
ATTTTTCTGAATTAATTTCTAATTGAATCAAAACAAGATTCAAATGCTCGTAAAAACAAATCTTT
AAATTCAAATGTAGCTGAGATTTGATTAGATAAATATAAATATTTCAAAGAGTCTTGGTCTCGGC
GCAAAAAATAATGCAAAACTAAGCCGGGGCCCGGAAACGCGTTTTTAGCCAAAAACCGTGATGGT
TAGTACACGATTCCAGCTTAGATTTTGCAGAAAATGACCAGAAAAATTTCCCCTCAATTTTTGGC
TAAAATACCCATAAAATATATATAATTTAACTCCAAAAAGGATTGGAGGACTTTTCACGCTTTTA
ATATCGTTTTTCATATTTTTCTAAATTAATTTCTAATTAAAACGAAACAAGGTTCAGATGCTCGT
ATAAACGAATCCTTAAATGCAATGTGGCTGAGAATTGATTAGATGATTATAGATATTTCAAGGAA
TCTCAACGCCAAAAATCATGCAAAACTGAGCCGAGCCCCAAAACGCGTTTTTAGCAAAAAAAACG
TGATGGTTAGTACACGATTTCGGGTAAAATTTTGCAAAAAATGCCCCGAAAAATTTTTCTTCAAT
TTTTGGCTAAAATACTCATGAAATATATATAATTTAACACCAAAAAGGTTGAAGGACTTTTCGTG
CTTTTCATATCCTTTTTCAT
Done.