Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019135.1 Corchorus olitorius cultivar O-4 contig19168, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9176

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1307--1349
22
2.0
22
100
0
86
39
13
13
32
1.85
2250--3363
335
3.3
326
80
8
1183
35
17
14
32
1.90
3969--4029
27
2.3
26
83
16
72
45
1
8
44
1.43
4315--4569
131
2.0
127
90
6
401
38
10
2
48
1.51
5119--5166
20
2.3
22
75
7
55
43
2
6
47
1.40
5177--5217
16
2.6
16
78
17
50
14
17
26
41
1.88
5423--5486
22
3.0
22
86
2
76
46
9
21
21
1.79
5432--5506
21
3.5
20
75
15
62
41
9
24
25
1.84
5445--5630
22
8.5
22
71
14
118
39
9
15
34
1.80
5528--5631
43
2.4
43
82
7
120
40
9
11
38
1.74
6034--6152
58
2.1
58
100
0
238
47
7
15
29
1.72
6044--6165
58
2.1
57
90
6
192
48
6
16
28
1.71
6241--6265
2
12.5
2
100
0
50
52
0
0
48
1.00
7395--7422
6
4.7
6
100
0
56
32
0
17
50
1.47
8010--8076
30
2.2
30
100
0
134
29
14
8
46
1.76

Tables:   1

The End!