Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01019136.1 Corchorus olitorius cultivar O-4 contig19169, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 186974
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Found at i:1694 original size:323 final size:320
Alignment explanation
Indices: 1089--2223 Score: 1119
Period size: 323 Copynumber: 3.5 Consensus size: 320
1079 TGTCCTTTAC
* * * * * ** * **
1089 CAAAAATTGTGATGGTTAATACACGATTTCTGTTAAAATTCTACAAAAATTTATCCAAAATAATT
1 CAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGTAAAAATTGA-CCCGAA-AATT
* * * *
1154 TTCCTAAATTTTTTGCCACGATACTCAT-AAAAATATATAATTCAACGCCAAAAATATTGAAAGG
64 TTCCTCAATTTTTGGCCACGATACTCATAAAAAATATATAACTCAACGCCAAAAAGATTGAAAGG
** *
1218 TTTTTCACGCTTCTAATATCGGTTTTCCTATTTTTTCCGAATTAATTTCTAGTTAAATCGAAACA
129 CCTTTCACGCTTCTAATAT---TTTT-C--TTTTTT-CGAATTAATTTCTAATTAAATCGAAACA
* *
1283 TGATTCAGATGCTCGTAAAAACAAATCCTTAAATTCAATGTGGTTGAGATTTGGTTAGATGGATA
187 TGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGAT--ATA
* *
1348 TAGATATTTCAATGAGACTTGGCGCCAAAAATCATGCAAAACAGAGCCGCGACCCCGAAACGCGT
250 TAGATATTTCAATGAGACTTGGCGCCAAAAATCATGCAAAACTGAGCCG-GACCCCGAAACGCCT
1413 TTTTAGT
314 TTTTAGT
* * *
1420 CAAAAACTGTGATGGTTAGTATATGATTTCGGCTAAAATTTTGTAAAAATTGACACGAAACATTT
1 CAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGTAAAAATTGACCCGAAA-ATTT
* * *
1485 CTCCTCAATTTTTGGCCACCATATTCATAAAAACTATATAACTCAACGCCAAAAAGATTGAAAGG
65 -TCCTCAATTTTTGGCCACGATACTCATAAAAAATATATAACTCAACGCCAAAAAGATTGAAAGG
* * * *
1550 CCTCTCACGCTTCTAATA-TTTT-TTTTTTCGAATTAATTTTTAATTAAATCGAAAC-TGGGTTG
129 CCTTTCACGCTTCTAATATTTTTCTTTTTTCGAATTAATTTCTAATTAAATCGAAACAT-GATTC
*
1612 AGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTCGTTAGATAAATATAGATA
193 AGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGAT--ATATAGATA
* * *
1677 TTCCAATGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGA-GCCGCAGAACGCCTTTTTA
256 TTTCAATGAGACTTGGCGCCAAAAATCATGCAAAACTGAGCCGGACCCCG-A-AACGCCTTTTTA
*
1741 GC
319 GT
* * * *
1743 CAAACACTGTGA---TAACGTACACGATTTCGACTAAAATTTTGTAAAAATTGACCCGGAAGGAT
1 CAAAAACTGTGATGGTTA-GTACACGATTTCGGCTAAAATTTTGTAAAAATTGACCC-GAA-AAT
* * * * ** *
1805 TTTTCTCAATTTTTGACCACGATACTCATAAAAAATATATAATTCAACACTGAAAATATTGAAAG
63 TTTCCTCAATTTTTGGCCACGATACTCATAAAAAATATATAACTCAACGCCAAAAAGATTGAAAG
* * * *
1870 G-CTATTCATGCTTCTAATATCGTTTTTCCTATTATTTCTGTATTAATTCCTAATTGAATCGAAA
128 GCCT-TTCACGCTTCTAATA---TTTTT-CT-TT-TTTC-GAATTAATTTCTAATTAAATCGAAA
* * *
1934 CATGATTCATATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGGTAAGATTTGGTTAG----A
185 CATGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATATA
* ** * * * * *
1995 TGGATATTTCAATGAGACTTAACGCCAAAAATCGTGCAAAACTGAGGCAGGGCTCCGGAACGCAT
250 TAGATATTTCAATGAGACTTGGCGCCAAAAATCATGCAAAACTGA-GCCGGACCCCGAAACGC--
2060 TTTTACTTTTTAGT
312 -----CTTTTTAGT
* * * * *
2074 CAAAAACCGTGATGGTTAATACACGATTTCAGCTAAAATATTGCAAAAATTGACCCGAGAAATTT
1 CAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGTAAAAATTGACCCGA-AAATTT
* * * * * * *
2139 CTCCTCAATTTTGGGTCACAATACT-ATTAAAAAATATACAACTCAATGCCAAAAAGACTGAAGG
65 -TCCTCAATTTTTGGCCACGATACTCA-TAAAAAATATATAACTCAACGCCAAAAAGATTGAAAG
* *
2203 GCTTTTCATGCTTCTAATATT
128 GCCTTTCACGCTTCTAATATT
2224 GTTTTTCCTA
Statistics
Matches: 666, Mismatches: 102, Indels: 73
0.79 0.12 0.09
Matches are distributed among these distances:
320 4 0.01
321 104 0.16
322 11 0.02
323 151 0.23
324 51 0.08
325 8 0.01
326 3 0.00
327 1 0.00
328 6 0.01
329 5 0.01
330 82 0.12
331 85 0.13
332 55 0.08
333 97 0.15
334 3 0.00
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (320 bp):
CAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGTAAAAATTGACCCGAAAATTTT
CCTCAATTTTTGGCCACGATACTCATAAAAAATATATAACTCAACGCCAAAAAGATTGAAAGGCC
TTTCACGCTTCTAATATTTTTCTTTTTTCGAATTAATTTCTAATTAAATCGAAACATGATTCAGA
TGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATATATAGATATTTCA
ATGAGACTTGGCGCCAAAAATCATGCAAAACTGAGCCGGACCCCGAAACGCCTTTTTAGT
Found at i:3353 original size:25 final size:23
Alignment explanation
Indices: 3295--3360 Score: 87
Period size: 23 Copynumber: 2.8 Consensus size: 23
3285 CAATGTATTA
3295 TTTAATCTTAAGTTTGGTGTCTT
1 TTTAATCTTAAGTTTGGTGTCTT
** *
3318 TTTTTTTTTAAGTTTGGTGTCAATT
1 TTTAATCTTAAGTTTGGTGTC--TT
3343 TTTAATCTTAAGTTTGGT
1 TTTAATCTTAAGTTTGGT
3361 AAGAGAAATA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
23 18 0.51
25 17 0.49
ACGTcount: A:0.18, C:0.06, G:0.17, T:0.59
Consensus pattern (23 bp):
TTTAATCTTAAGTTTGGTGTCTT
Found at i:14195 original size:107 final size:107
Alignment explanation
Indices: 14009--14225 Score: 434
Period size: 107 Copynumber: 2.0 Consensus size: 107
13999 TGATCTTGAT
14009 AGGATTAGTAGGAACTTTGTATGGGCAGCACCAGTGAGAAGAGGAAATTGCATTTTGTTAATTGG
1 AGGATTAGTAGGAACTTTGTATGGGCAGCACCAGTGAGAAGAGGAAATTGCATTTTGTTAATTGG
14074 GAAACTGTCACTAACTCCAAGGAGGATGGTTGGTTGGGTATC
66 GAAACTGTCACTAACTCCAAGGAGGATGGTTGGTTGGGTATC
14116 AGGATTAGTAGGAACTTTGTATGGGCAGCACCAGTGAGAAGAGGAAATTGCATTTTGTTAATTGG
1 AGGATTAGTAGGAACTTTGTATGGGCAGCACCAGTGAGAAGAGGAAATTGCATTTTGTTAATTGG
14181 GAAACTGTCACTAACTCCAAGGAGGATGGTTGGTTGGGTATC
66 GAAACTGTCACTAACTCCAAGGAGGATGGTTGGTTGGGTATC
14223 AGG
1 AGG
14226 GCTGCAAAAC
Statistics
Matches: 110, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
107 110 1.00
ACGTcount: A:0.29, C:0.12, G:0.31, T:0.28
Consensus pattern (107 bp):
AGGATTAGTAGGAACTTTGTATGGGCAGCACCAGTGAGAAGAGGAAATTGCATTTTGTTAATTGG
GAAACTGTCACTAACTCCAAGGAGGATGGTTGGTTGGGTATC
Found at i:19986 original size:34 final size:34
Alignment explanation
Indices: 19943--20008 Score: 132
Period size: 34 Copynumber: 1.9 Consensus size: 34
19933 GCAAAAGTGC
19943 ATAATTAACATTGTTTTTATTCTTGTTTTTTTTT
1 ATAATTAACATTGTTTTTATTCTTGTTTTTTTTT
19977 ATAATTAACATTGTTTTTATTCTTGTTTTTTT
1 ATAATTAACATTGTTTTTATTCTTGTTTTTTT
20009 ATGCAGTATC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.21, C:0.06, G:0.06, T:0.67
Consensus pattern (34 bp):
ATAATTAACATTGTTTTTATTCTTGTTTTTTTTT
Found at i:21754 original size:18 final size:15
Alignment explanation
Indices: 21715--21769 Score: 58
Period size: 18 Copynumber: 3.4 Consensus size: 15
21705 GTTTAATCAA
21715 TTTTTG-TTATAAAG
1 TTTTTGTTTATAAAG
21729 TTGTTTGTCTTGATAAAG
1 TT-TTTGT-TT-ATAAAG
21747 TTTATTGTTTATAACAG
1 TTT-TTGTTTATAA-AG
21764 TTTTTG
1 TTTTTG
21770 GAAACTGAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
14 2 0.06
15 4 0.11
16 7 0.20
17 10 0.29
18 12 0.34
ACGTcount: A:0.24, C:0.04, G:0.16, T:0.56
Consensus pattern (15 bp):
TTTTTGTTTATAAAG
Found at i:23650 original size:410 final size:411
Alignment explanation
Indices: 22888--23801 Score: 1677
Period size: 410 Copynumber: 2.2 Consensus size: 411
22878 GCCAGGTCTA
* *
22888 GGTAGAAGGATAAGACACAACACTTTCTCTTAAAATCTTTTCTGTCCTCATTAACGCATTTAACC
1 GGTAGAAGGATAAGACACAACACTTTCTCTTAAAATCTTTTCTGTCCCCATTAACTCATTTAACC
*
22953 TGATCCCATTTTCTTCTATCTCAAAGATGAAACTACTTCCCCCTTGACACTTATATTTTCTCCAT
66 TGATCCCATTTTCTTCTGTCTCAAAGATGAAACTACTTCCCCCTTGACACTTATATTTTCTCCAT
23018 GGGCTCCCACAACTTGACACATCAACATTTTTTTTTTCACTTTTTTTTTGTCACCAATGGGCTTG
131 GGGCTCCCACAACTTGACACATCAACATTTTTTTTTTCAC-TTTTTTTTGTCACCAATGGGCTTG
23083 GGTCGTTTTTTTGTCATGGGCTTGCTTTTTTTTTCTTTGGCCCGACACTCTTCTCCCTCAATATT
195 GGTCGTTTTTTTGTCATGGGCTTGCTTTTTTTTTCTTTGGCCCGACACTCTTCTCCCTCAATATT
* *
23148 TCCCCTTAATTCCCCCGTTCCATAGCTTTTTCCTCTCTCTTTCGTTTGAACTCACTTTTCGCTTC
260 TCCCATCAATTCCCCCGTTCCATAGCTTTTTCCTCTCTCTTTCGTTTGAACTCACTTTTCGCTTC
23213 TTTAGGTTTTCTTCAGTTCTTATAATGATAGCGCCTTTGAACTCAATTTCACCAGCCACTCTCTC
325 TTTAGGTTTTCTTCAGTTCTTATAATGATAGCGCCTTTGAACTCAATTTCACCAGCCACTCTCTC
23278 ACCCTAACACCTTTTATGAATC
390 ACCCTAACACCTTTTATGAATC
23300 GGTAGAAGGATAAGACACAACACTTTCTCTTAAAATCTTTTCTGTCCCCATTAACTCATTTAACC
1 GGTAGAAGGATAAGACACAACACTTTCTCTTAAAATCTTTTCTGTCCCCATTAACTCATTTAACC
23365 TGATCCCATTTTCTTCTGTCTCAAAGATGAAACTACTTCCCCCTTGACACTTATATTTTCTCCAT
66 TGATCCCATTTTCTTCTGTCTCAAAGATGAAACTACTTCCCCCTTGACACTTATATTTTCTCCAT
*
23430 GGGCTCCCACAACTTGACACATCAACATTTTTTTTTTCAC-TTTTTTTGTCACCAGTGGGCTTGG
131 GGGCTCCCACAACTTGACACATCAACATTTTTTTTTTCACTTTTTTTTGTCACCAATGGGCTTGG
*
23494 GTCGTTTTTTTGTCATGGGCTTGCTTTTTTTTTCTTTGGCCCGACACTCTTCTCCCTCACTATTT
196 GTCGTTTTTTTGTCATGGGCTTGCTTTTTTTTTCTTTGGCCCGACACTCTTCTCCCTCAATATTT
*
23559 CCCATCAATTCCCCTGTTCCATAGCTTTTTCCTCTCTCTTTCGTTTGAACTCACTTTTCGCTTCT
261 CCCATCAATTCCCCCGTTCCATAGCTTTTTCCTCTCTCTTTCGTTTGAACTCACTTTTCGCTTCT
* *
23624 TTAGGTTTTCTTCAGTTCTTATAATGATAGCGCCTTTGAACTCAATTTCACTAGTCACTCTCTCA
326 TTAGGTTTTCTTCAGTTCTTATAATGATAGCGCCTTTGAACTCAATTTCACCAGCCACTCTCTCA
*
23689 CCCTAACACCTTTTATTAATC
391 CCCTAACACCTTTTATGAATC
* * *
23710 GGTAGAAGAATAAGACATAACACTTTCTCTTAAAATCTTTTATGTCCCCATTAACTCATTTAACC
1 GGTAGAAGGATAAGACACAACACTTTCTCTTAAAATCTTTTCTGTCCCCATTAACTCATTTAACC
*
23775 TGATCCCATTTTATTCTGTCTCAAAGA
66 TGATCCCATTTTCTTCTGTCTCAAAGA
23802 CTAACAAGTC
Statistics
Matches: 487, Mismatches: 15, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
410 320 0.66
412 167 0.34
ACGTcount: A:0.21, C:0.27, G:0.11, T:0.40
Consensus pattern (411 bp):
GGTAGAAGGATAAGACACAACACTTTCTCTTAAAATCTTTTCTGTCCCCATTAACTCATTTAACC
TGATCCCATTTTCTTCTGTCTCAAAGATGAAACTACTTCCCCCTTGACACTTATATTTTCTCCAT
GGGCTCCCACAACTTGACACATCAACATTTTTTTTTTCACTTTTTTTTGTCACCAATGGGCTTGG
GTCGTTTTTTTGTCATGGGCTTGCTTTTTTTTTCTTTGGCCCGACACTCTTCTCCCTCAATATTT
CCCATCAATTCCCCCGTTCCATAGCTTTTTCCTCTCTCTTTCGTTTGAACTCACTTTTCGCTTCT
TTAGGTTTTCTTCAGTTCTTATAATGATAGCGCCTTTGAACTCAATTTCACCAGCCACTCTCTCA
CCCTAACACCTTTTATGAATC
Found at i:28336 original size:16 final size:16
Alignment explanation
Indices: 28315--28346 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
28305 GTATGATCAT
28315 ATATATTCATATGATC
1 ATATATTCATATGATC
*
28331 ATATATTCATGTGATC
1 ATATATTCATATGATC
28347 TAGCCTCGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.12, G:0.09, T:0.44
Consensus pattern (16 bp):
ATATATTCATATGATC
Found at i:57627 original size:80 final size:79
Alignment explanation
Indices: 57495--57642 Score: 224
Period size: 80 Copynumber: 1.9 Consensus size: 79
57485 ATAACAAGGC
* * * * *
57495 TGACAACTCATCAGGTAGCTCCGTAGAACTTTAAATTTATCATTTATTTTACAACCTGATTTACT
1 TGACAACTCATCAGGTAACTCCGTAGAACTTCAAAATTATCATTCATCTTACAACCTGATTTACT
57560 AATACTAATAAAAT
66 AATACTAATAAAAT
* *
57574 TGACAACTCATCAGGTAATTCTTGTAGAACTTCAAAATTATCATTCATCTTACAACCTGATTTAC
1 TGACAACTCATCAGGTAACTC-CGTAGAACTTCAAAATTATCATTCATCTTACAACCTGATTTAC
57639 TAAT
65 TAAT
57643 GCATCTACAT
Statistics
Matches: 61, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
79 19 0.31
80 42 0.69
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.36
Consensus pattern (79 bp):
TGACAACTCATCAGGTAACTCCGTAGAACTTCAAAATTATCATTCATCTTACAACCTGATTTACT
AATACTAATAAAAT
Found at i:78516 original size:15 final size:15
Alignment explanation
Indices: 78496--78525 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
78486 ACTCTTTTTG
78496 TTATCAGGGGATGTT
1 TTATCAGGGGATGTT
78511 TTATCAGGGGATGTT
1 TTATCAGGGGATGTT
78526 GATCACTTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.07, G:0.33, T:0.40
Consensus pattern (15 bp):
TTATCAGGGGATGTT
Found at i:98295 original size:29 final size:31
Alignment explanation
Indices: 98240--98316 Score: 95
Period size: 29 Copynumber: 2.5 Consensus size: 31
98230 ATACCGTACA
* *
98240 GGTCCCTCTACTTACAAAAAGTGATCAATTT
1 GGTCCCTATACTTACAAAAACTGATCAATTT
*
98271 GGTCCCTATA-TTATAAAAACT-ATCAATTT
1 GGTCCCTATACTTACAAAAACTGATCAATTT
* *
98300 GGTCCCTCTAATTACAA
1 GGTCCCTATACTTACAA
98317 TTTGGTGTTA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
29 17 0.43
30 14 0.35
31 9 0.22
ACGTcount: A:0.34, C:0.22, G:0.10, T:0.34
Consensus pattern (31 bp):
GGTCCCTATACTTACAAAAACTGATCAATTT
Found at i:102322 original size:994 final size:983
Alignment explanation
Indices: 100417--102921 Score: 2420
Period size: 994 Copynumber: 2.5 Consensus size: 983
100407 ATGGTACACA
* * * *
100417 ATTTCGGCTAAAATTTTACAAAAATTGACCCGAAATATTTTTTCTCAATTTTTAGCCACAATATT
1 ATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAATATTTTTCCTCAATTTTTAGTCACAATACT
*
100482 CATAAAAAATATATAATTCAACGCCAAAAAAATTGAAGGGCTTCTCACGCTTCTAATATCGTTTT
66 CAT-AAAAATATATAATTCAACGCCAAAAAAATTGAAGGGCTTTTCACGCTTCTAATATCGTTTT
* ** * * *
100547 TCCTATTTGTTTTCAAATTAATTTCTAATTAAATTGAAACATGATTCAAATGCTCGTAAAAAGAA
130 TCCTATTT-TTTCCAAATTAATTTCTAATTAAAAAG-AACATGATTCAAATG-AC---AATA-TA
* * * * *
100612 ATCCTTAAATCCAATGTGGCTAAGATTTGGTTAGATGAATATAGATATTTCAAGGAATTTTGCCA
188 A-----AAA--CAA--TGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTTTCGGCG
* * * * *
100677 CTAAAAATCATGCAAAACTGACCCGGGGCCCCAGAACATGTTTTTAGCCAAAAACCGTGATG---
244 CCAAAAATCATGCAAATCTGAACC-GGGCCCCGGAACGTGTTTTTAGCCAAAAACCGTGATGTTA
* * * * * *
100739 GTACACGGTATCGGCTAAAACTTTCCAAAAATTGACCCGAAATATTTTTCCTCCATTTTTAGCCA
308 GTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAGA-TTTTCCTCAATTTTTAGCCA
* * * * * *
100804 CATGTACTT-ATAGAAAATATATAATTAAAAGCCAAAAATATTGGAGGACTCTTCACGCTTTTAA
372 TA-ATA-TTCATAAAAAATATATAATTCAAAGCCAAAAAGATTGGAGGACTTTTCACGCTTTTAA
* * * * * * *
100868 TATCATTTTTTATA-TTTTTCTGAATAAATTTCTAATTTAATCGAAATAAGATTTAGATG--C-T
435 TATCGTTTTTCATATTTTTTCTAAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGT
* * * * * * *
100929 T-----GTAAAAACAAATCCTTAAATGCTATGTGTCTGAGATTTGATTAGATGAATATGGATATC
500 TAAAAAGAAAAAAAAAATCCTTAAATGCAATGCGGCTAAGATTTGATTAGATGAATATAGATATC
* * * * *
100989 TCAAGTAGTTTTAGCACCAAAAATCATGCAAAACTAACCCAGGGCCTTGGAACGCATTTTTAGCC
565 TCAAGGAGTTTCAGCACCAAAAATCATGCAAAACTAA-CCAGGGCATCGAAACGCATTTTTAGCC
* * * * * *
101054 AAAAACCGTGATGATTATTACATGATTTCGGCTAACATTTTGCAAAAACTGATCGGAAATATATT
629 AAAAACCGTGATGATTAGTACACGATTTCGGCTAAAATTTTGCAAAAACTAACCGAAAATATATT
** * *
101119 TCCTCAATTTTTTTGCTAAATCATCATAAAAAATAATATAATTCTACGTCAAAAATATTAAAGGA
694 TCCTCAATTTTTCAGATAAATCATCATAAAAAATAATATAATTCTACGGCAAAAATATTAAAGGA
* * * * *
101184 TTTTTTACGTTTCTAATATAGTTTTTCCTACTATTTTCGAATTAATTTTTAATTAAATGGAAAGA
759 CTTTTCACGTTTCTAATATAGTTTTTCCTACTATTTTCGAATTAATTTCTAATTAAATCGAAACA
* * ** * *
101249 AGATTTAGATGCTCGTAAAAACAATTCCTTAAATCTAATGTGGCTGAGATTTGATTAGTTTAATA
824 AGATTTAGATGCTCGTAAAAACAATTCCTTAAATCCAATGCGAATGAGATTTGATTAGATGAATA
* * * *
101314 TAGATAGTTCAAGGAGTCTTGGCGCCAAAAATCATGCAATATTGA-CCCGGGGTCC-TAGAACGC
889 TAGATAGTTCAAGGAGTCTTGGCGCC-AAAATCATGCAAAACTGAGCCC-GGG-CCACAAAACGC
*
101377 GTTTTTAGCAAAAAAAAAAAATGTGAT-GTT-GGAC-G
951 GTTTTTAGC-----AAAAAAATGTGATGGTTAGAACAG
* * * * *
101412 ATTTCGACTAATATTTTGCAAAGAA-TGACGCGAAATATTTTTCCTCAAATTTTAGTCACAGTAC
1 ATTTCGGCTAAAATTTTGCAAA-AATTGACCCGAAATATTTTTCCTCAATTTTTAGTCACAATAC
* * * * *
101476 TCATAAAAATATATAATTCAGCGCCAAAAAGATTGATGGGCTTTTCATGCTTCTAATACCGTTTT
65 TCATAAAAATATATAATTCAACGCCAAAAAAATTGAAGGGCTTTTCACGCTTCTAATATCGTTTT
*
101541 TCCTA-TTTTTCCGAATTAATTTCTAATTAAAAAGTAACATGATTCAAATG-C-ATATAAAAACA
130 TCCTATTTTTTCCAAATTAATTTCTAATTAAAAAG-AACATGATTCAAATGACAATATAAAAACA
* * * *
101603 ATGGCTGAGATTTGGTTAGATGAATATAGACATTTCCAGGAGTCTCGGCGCCAAAAATCAT-TAA
194 ATGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTTTCGGCGCCAAAAATCATGCAA
** * * *
101667 ATCTGAAATGGGCCTCGGAACGTGTTTTTAGCCAAAATCCGTGATGATTATTACACGATTTCGGC
259 ATCTGAACCGGGCCCCGGAACGTGTTTTTAGCCAAAAACCGTGATG-TTAGTACACGATTTCGGC
** *
101732 TAAAATTTTGCAAAAATTGACCCGATCGATATTTCCTCAATTTTTATCCATAATATTCATAAAAA
323 TAAAATTTTGCAAAAATTGACCCGAAAGAT-TTTCCTCAATTTTTAGCCATAATATTCATAAAAA
* * * *
101797 ATATATAATTCAATGCCAAAAAGATTGAAGGACTTTTGACGCTTTTAATATTGTTTTTCATATTT
387 ATATATAATTCAAAGCCAAAAAGATTGGAGGACTTTTCACGCTTTTAATATCGTTTTTCATATTT
*
101862 TTTCTAAATTAATTTCTAATTAAATCGAAACATGATTCAGATGCTCGTTAAAAAAAAAAGAAAGA
452 TTTCTAAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTT-----AAAAAGAAA-A
* * *
101927 AAGAAAAT-CTTAAATGCAATGCGGCTAAGATTTTATTAGATGAATATAGTTATTTCAAGGAGTT
511 AA-AAAATCCTTAAATGCAATGCGGCTAAGATTTGATTAGATGAATATAGATATCTCAAGGAGTT
* ** * *
101991 TCGGTGCCAAAAATCATGCAAAACTGAA-CTGGTGCATCGAAACGCGTTTTTAGCCAAAAACCGT
575 TCAGCACCAAAAATCATGCAAAACT-AACCAGG-GCATCGAAACGCATTTTTAGCCAAAAACCGT
* * * *
102055 GATGGTGTTAGTACACGATTTTGGCTAAAATTTTGCAAAATA-TAACCCGAAAAT-TTTTTCTTC
638 GAT-G-ATTAGTACACGATTTCGGCTAAAATTTTGCAAAA-ACTAA-CCGAAAATATATTTCCTC
* **
102118 AA-TTTTCAGATAAAAT-ACTCCTAAAAAATATATATAATT-TAACGGCAAAAATATTTGAGGAC
699 AATTTTTCAGAT-AAATCA-TCATAAAAAATA-ATATAATTCT-ACGGCAAAAATATTAAAGGAC
* * *
102180 TTTTCATGCTTT-TAATATCGTTTTT-C-AC-ATTTTTCTGTATTAATTTCTAATTAAATCGAAA
760 TTTTCACG-TTTCTAATATAGTTTTTCCTACTA-TTTTC-GAATTAATTTCTAATTAAATCGAAA
* ** * * *
102241 CAAGATTTAGATGTTTTTTAAAACAAATT-TTTAAATCCAATGCGAATGTGATTTGATTAGATGA
822 CAAGATTTAGATGCTCGTAAAAAC-AATTCCTTAAATCCAATGCGAATGAGATTTGATTAGATGA
* *
102305 GTATAGATA-TCTCAAGGAGTCTTGGCGCCAAAATCATGCAAAACTGAGCTCGGGCCACAAAACG
886 ATATAGATAGT-TCAAGGAGTCTTGGCGCCAAAATCATGCAAAACTGAGCCCGGGCCACAAAACG
** * * * *
102369 TTTTTTTATCCAAAAACTGTGATGGTTATAACATG
950 CGTTTTTAGCAAAAAAATGTGATGGTTAGAACA-G
* * * *
102404 ATTTCGGCTAAAATTTTGTAAAAATTGACCCGAAAGA--TTTCCTCAATTTTTGGAT-AAAATAC
1 ATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAATATTTTTCCTCAATTTTTAG-TCACAATAC
* * * *
102466 TCATAAAAATATATAACTCAACGCCAAAAATATTGAAGGGCTTTTGACGTTTCTAATATCGTTTT
65 TCATAAAAATATATAATTCAACGCCAAAAAAATTGAAGGGCTTTTCACGCTTCTAATATCGTTTT
* * *
102531 TCCTATTTTTTCCAAATTAATTTCTAATCGAAACAA-AATTCA-GATGCTCATAAAGACAAATCC
130 TCCTATTTTTTCCAAATTAATTTCTAAT-TAAA-AAGAA--CATGAT--TCA-AATGAC-AAT-A
* * * * * * * *
102594 TTAAATCTAATGTTGGTGAGATTTGATTAGATGAATATACATATTTCAAGTAGTTTCGGAGCCAG
186 TAAAAAC-AATG--GCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTTTCGGCGCCAA
*
102659 AAATCATGCGAAAT-TGAGCCGGGTCCCCGGAACGTGTTTTTAGCCAAAAACCGTGATGGTTTGT
248 AAATCATGC-AAATCTGAACCGGG-CCCCGGAACGTGTTTTTAGCCAAAAACCGTGA-----TGT
* ** * *
102723 TAGTACACGATTTCCGCTAAAATTTTGCAAAAATTGACATGAAAGATTTCTTCTCAATTTTT-GG
306 TAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAGATTT-TCCTCAATTTTTAGC
* * * * *
102787 C-TAAAATAC-TAATAAAATATATAATTCAACGCCAAAAAGATTGGAGGGCTTTTTACGCTTTTA
370 CATAATATTCATAA-AAAATATATAATTCAAAGCCAAAAAGATTGGAGGACTTTTCACGCTTTTA
* * * *
102850 ATATCGTATTTCTTATTTTTTTTTAAATTAATTTCTAATTAAATCGAAACAAGATTCATATGCTC
434 ATATCGTTTTTCATA-TTTTTTCTAAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTC
102915 G-TAAAAA
498 GTTAAAAA
102922 TAAATTATTA
Statistics
Matches: 1241, Mismatches: 197, Indels: 138
0.79 0.12 0.09
Matches are distributed among these distances:
974 33 0.03
975 7 0.01
976 53 0.04
977 62 0.05
978 96 0.08
980 4 0.00
981 2 0.00
985 2 0.00
986 2 0.00
988 11 0.01
989 3 0.00
990 84 0.07
991 32 0.03
992 178 0.14
993 59 0.05
994 216 0.17
995 113 0.09
996 6 0.00
998 2 0.00
999 5 0.00
1000 4 0.00
1001 5 0.00
1002 49 0.04
1003 6 0.00
1004 34 0.03
1005 3 0.00
1006 65 0.05
1007 50 0.04
1008 53 0.04
1009 2 0.00
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.34
Consensus pattern (983 bp):
ATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAATATTTTTCCTCAATTTTTAGTCACAATACT
CATAAAAATATATAATTCAACGCCAAAAAAATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTT
CCTATTTTTTCCAAATTAATTTCTAATTAAAAAGAACATGATTCAAATGACAATATAAAAACAAT
GGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTTTCGGCGCCAAAAATCATGCAAAT
CTGAACCGGGCCCCGGAACGTGTTTTTAGCCAAAAACCGTGATGTTAGTACACGATTTCGGCTAA
AATTTTGCAAAAATTGACCCGAAAGATTTTCCTCAATTTTTAGCCATAATATTCATAAAAAATAT
ATAATTCAAAGCCAAAAAGATTGGAGGACTTTTCACGCTTTTAATATCGTTTTTCATATTTTTTC
TAAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTTAAAAAGAAAAAAAAAATCCT
TAAATGCAATGCGGCTAAGATTTGATTAGATGAATATAGATATCTCAAGGAGTTTCAGCACCAAA
AATCATGCAAAACTAACCAGGGCATCGAAACGCATTTTTAGCCAAAAACCGTGATGATTAGTACA
CGATTTCGGCTAAAATTTTGCAAAAACTAACCGAAAATATATTTCCTCAATTTTTCAGATAAATC
ATCATAAAAAATAATATAATTCTACGGCAAAAATATTAAAGGACTTTTCACGTTTCTAATATAGT
TTTTCCTACTATTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAAC
AATTCCTTAAATCCAATGCGAATGAGATTTGATTAGATGAATATAGATAGTTCAAGGAGTCTTGG
CGCCAAAATCATGCAAAACTGAGCCCGGGCCACAAAACGCGTTTTTAGCAAAAAAATGTGATGGT
TAGAACAG
Found at i:103243 original size:31 final size:30
Alignment explanation
Indices: 103205--103372 Score: 107
Period size: 31 Copynumber: 5.6 Consensus size: 30
103195 ATAGGCTAAT
103205 TGCTCAAATAAGGGCCTAACGTTTGCCAAAA
1 TGCTCAAATAAGGGCCTAACGTTTG-CAAAA
* * **
103236 TGCTCAAATAAGGGTCTAATCTTTTG--ATT
1 TGCTCAAATAAGGGCCTAA-CGTTTGCAAAA
* *
103265 TGGC-CAAATAAGAGCCTAATGTTTGACAAAA
1 T-GCTCAAATAAGGGCCTAACGTTTG-CAAAA
* * **
103296 TACTCAAATAAGGG-CTCAATC-TTT-TAATT
1 TGCTCAAATAAGGGCCT-AA-CGTTTGCAAAA
* *
103325 TGGC-CTAATAAGGGCCTAACGTTTACCAAAA
1 T-GCTCAAATAAGGGCCTAACGTTT-GCAAAA
103356 TGCTCAAATAAGGGCCT
1 TGCTCAAATAAGGGCCT
103373 GGCATCGAAA
Statistics
Matches: 101, Mismatches: 22, Indels: 28
0.67 0.15 0.19
Matches are distributed among these distances:
28 5 0.05
29 32 0.32
30 10 0.10
31 49 0.49
32 5 0.05
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.29
Consensus pattern (30 bp):
TGCTCAAATAAGGGCCTAACGTTTGCAAAA
Found at i:103302 original size:60 final size:60
Alignment explanation
Indices: 103209--103370 Score: 238
Period size: 60 Copynumber: 2.7 Consensus size: 60
103199 GCTAATTGCT
* *
103209 CAAATAAGGGCCTAACGTTTGCCAAAATGCTCAAATAAGGG-TCTAATCTTTTGATTTGGC
1 CAAATAAGGGCCTAACGTTTGACAAAATGCTCAAATAAGGGCTC-AATCTTTTAATTTGGC
* * *
103269 CAAATAAGAGCCTAATGTTTGACAAAATACTCAAATAAGGGCTCAATCTTTTAATTTGGC
1 CAAATAAGGGCCTAACGTTTGACAAAATGCTCAAATAAGGGCTCAATCTTTTAATTTGGC
*
103329 CTAATAAGGGCCTAACGTTT-ACCAAAATGCTCAAATAAGGGC
1 CAAATAAGGGCCTAACGTTTGA-CAAAATGCTCAAATAAGGGC
103371 CTGGCATCGA
Statistics
Matches: 91, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
59 1 0.01
60 88 0.97
61 2 0.02
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.28
Consensus pattern (60 bp):
CAAATAAGGGCCTAACGTTTGACAAAATGCTCAAATAAGGGCTCAATCTTTTAATTTGGC
Found at i:103449 original size:31 final size:31
Alignment explanation
Indices: 103411--103512 Score: 93
Period size: 31 Copynumber: 3.4 Consensus size: 31
103401 AACTGACGCC
103411 AGGCCCTTATTTGAACATTTTCGATAACGTT
1 AGGCCCTTATTTGAACATTTTCGATAACGTT
** ** * *
103442 AGGCCCTTATTTGCCCAAATT--A-AAAGAT
1 AGGCCCTTATTTGAACATTTTCGATAACGTT
* * *
103470 CGAGCTCTTATTTGAGCATTTTCGATAACGTT
1 AG-GCCCTTATTTGAACATTTTCGATAACGTT
103502 AGGCCCTTATT
1 AGGCCCTTATT
103513 GGCCAAATTA
Statistics
Matches: 51, Mismatches: 16, Indels: 8
0.68 0.21 0.11
Matches are distributed among these distances:
28 5 0.10
29 15 0.29
31 26 0.51
32 5 0.10
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (31 bp):
AGGCCCTTATTTGAACATTTTCGATAACGTT
Found at i:103546 original size:59 final size:60
Alignment explanation
Indices: 103413--103550 Score: 217
Period size: 60 Copynumber: 2.3 Consensus size: 60
103403 CTGACGCCAG
*
103413 GCCCTTATTTGAACATTTTCGATAACGTTAGGCCCTTATTTGCCCAAATTAAAAGATCGA
1 GCCCTTATTTGAGCATTTTCGATAACGTTAGGCCCTTATTTGCCCAAATTAAAAGATCGA
* * *
103473 GCTCTTATTTGAGCATTTTCGATAACGTTAGGCCCTTA-TTGGCCAAATTAAGAGATCG-
1 GCCCTTATTTGAGCATTTTCGATAACGTTAGGCCCTTATTTGCCCAAATTAAAAGATCGA
103531 GACCCTTATTTGAGCATTTT
1 G-CCCTTATTTGAGCATTTT
103551 GTCAAACATT
Statistics
Matches: 72, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
58 1 0.01
59 35 0.49
60 36 0.50
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (60 bp):
GCCCTTATTTGAGCATTTTCGATAACGTTAGGCCCTTATTTGCCCAAATTAAAAGATCGA
Found at i:103570 original size:59 final size:59
Alignment explanation
Indices: 103413--103571 Score: 180
Period size: 59 Copynumber: 2.7 Consensus size: 59
103403 CTGACGCCAG
* * *
103413 GCCCTTATTTGAACATTTTCGATAACGTTAGGCCCTTATTTGCCCAAATTAAAAGATCGA
1 GCCCTTATTTGAGCATTTTCGATAACATTAGACCCTTA-TTGCCCAAATTAAAAGATCGA
* * * * *
103473 GCTCTTATTTGAGCATTTTCGATAACGTTAGGCCCTTATTGGCCAAATTAAGAGATCG-
1 GCCCTTATTTGAGCATTTTCGATAACATTAGACCCTTATTGCCCAAATTAAAAGATCGA
*
103531 GACCCTTATTTGAGCATTTT-G-TCAAACATTAGACTCTTATT
1 G-CCCTTATTTGAGCATTTTCGAT--AACATTAGACCCTTATT
103572 TGAGTAATTA
Statistics
Matches: 88, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
57 1 0.01
58 2 0.02
59 49 0.56
60 36 0.41
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.36
Consensus pattern (59 bp):
GCCCTTATTTGAGCATTTTCGATAACATTAGACCCTTATTGCCCAAATTAAAAGATCGA
Found at i:110745 original size:2 final size:2
Alignment explanation
Indices: 110738--110765 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
110728 TATCATGATT
110738 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
110766 CAGGTGGGAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:145981 original size:28 final size:28
Alignment explanation
Indices: 145941--146024 Score: 168
Period size: 28 Copynumber: 3.0 Consensus size: 28
145931 TTCTACTACC
145941 AATATGGAAGGTATATATATTAATAACT
1 AATATGGAAGGTATATATATTAATAACT
145969 AATATGGAAGGTATATATATTAATAACT
1 AATATGGAAGGTATATATATTAATAACT
145997 AATATGGAAGGTATATATATTAATAACT
1 AATATGGAAGGTATATATATTAATAACT
146025 TGACCATATA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 56 1.00
ACGTcount: A:0.46, C:0.04, G:0.14, T:0.36
Consensus pattern (28 bp):
AATATGGAAGGTATATATATTAATAACT
Found at i:154356 original size:45 final size:46
Alignment explanation
Indices: 154279--154367 Score: 153
Period size: 45 Copynumber: 2.0 Consensus size: 46
154269 CTCCTTCTTC
*
154279 CCTTTCTCTCTAGTTTTTTCTTCTGAGTTTTTGTTTACTCCTCCCA
1 CCTTTCTCTCTAGTTTTTTCTTATGAGTTTTTGTTTACTCCTCCCA
*
154325 CCTTTCTCTCTAG-TTTTTCTTATGAGTTTTTGTTTGCTCCTCC
1 CCTTTCTCTCTAGTTTTTTCTTATGAGTTTTTGTTTACTCCTCC
154368 TCCTTGACCA
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
45 28 0.68
46 13 0.32
ACGTcount: A:0.08, C:0.27, G:0.10, T:0.55
Consensus pattern (46 bp):
CCTTTCTCTCTAGTTTTTTCTTATGAGTTTTTGTTTACTCCTCCCA
Found at i:156427 original size:15 final size:15
Alignment explanation
Indices: 156407--156440 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
156397 ACATTCTTTG
156407 TTATAGATTTTTTTA
1 TTATAGATTTTTTTA
156422 TTATAGATTTTTTTA
1 TTATAGATTTTTTTA
156437 TTAT
1 TTAT
156441 TATTTGAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (15 bp):
TTATAGATTTTTTTA
Found at i:158034 original size:532 final size:525
Alignment explanation
Indices: 157030--158066 Score: 1509
Period size: 532 Copynumber: 1.9 Consensus size: 525
157020 GGCATTTAGA
* * * *
157030 AATCTACTTCTTTGAATAAATTTCTATTCGAATTAAATTGTTTGATGCGTAGAAAATTTCGAATG
1 AATCTACTTCTTTGAACAAATTTCTATTCGAATTAAATTATTTGATACGTAGAAAATTTCGAAAG
* *
157095 TACTATGATTTTAAATGTGTTGCATCTTTAAAAGGCTATACTATTAACATTGAGCATATGCCCTA
66 TAATATGATCTTAAATGTGTTGCATCTTTAAAAGGCTATACTATTAACATTGAGCATA----CT-
* *
157160 AAGTTGGCAATAAATAGTAAATATTAGTTTGTACATGGACATGTGCAATAGCTTCAATTTTGTTT
126 -A-TTAGCAATAAATAGAAAATATTAGTTTGTACATGGACATGTGCAATAGCTTCAATTTTGTTT
*
157225 CCTCTTCGAAAGTGTGTAACACTTAAACAGAAAACTAAATTTACTCTCTTCTTTATATGGACATG
189 CCTCTTCGAAAGTGTGTAACACTTAAACAGAAAACTAAATTTACTCTCTTCTTTATATGGAAATG
* *
157290 AAAGGCCTGAAAGAGGTTACAATTCTAGATAATTAAGGGGAGACATGATTTATTATAACATTTAT
254 AAAGGCCTGAAAGAGGTTACAATTCTAGATAATTAAGGGGAGACAGGATTTAATATAACATTTAT
*
157355 GTGAAAGGAAAGGATAATTACAAGAAAGGGCTCAAGGGTAAGAAACTAACCTAAGGTCTTCTTAG
319 GTGAAAGGAAAGGATAATTACAAAAAAGGGCTCAAGGGTAAGAAACTAACCTAAGGTCTTCTTAG
* *
157420 TAATTTGGCAAGTGAAAAAGGACAGAAAAGGACAAAAAAAGTTCAAATGGAGCCTCCTCATCGAT
384 TAATTTGGCAAGTGAAAAAGGACAGAAAAGGACAAAAAAAGTTCAAATAGAGCCTCCTCATCAAT
157485 CCTCAAAAGGGGCCTTTGGTAAATTCCCTGGGTCTTTCAAATAATATTTATTAGTATTAGTATTA
449 CCTCAAAAGGGGCCTTTGGTAAATTCCCTGGGTCTTTCAAATAATATTTATTAGTATTAGTATTA
157550 GGGGCGTTCAGC
514 GGGGCGTTCAGC
** * *
157562 AATCTACTTCTTTGAACATTTTTCTATTCTAATTAAATTATTTGATACGTAGGAAATTTCGAAAG
1 AATCTACTTCTTTGAACAAATTTCTATTCGAATTAAATTATTTGATACGTAGAAAATTTCGAAAG
*
157627 TAATATGATCTTAGATGTGTTGCATCTTTAAAAGGCTATACTATTAACATTGAGCATA-T-TTAG
66 TAATATGATCTTAAATGTGTTGCATCTTTAAAAGGCTATACTATTAACATTGAGCATACTATTAG
* *
157690 CAATAAATTA-AAAATATTAGTTTGTACATGGACA-GATGCAATAGCTTCAATTTTATTTTCT-T
131 CAATAAA-TAGAAAATATTAGTTTGTACATGGACATG-TGCAATAGCTTCAATTTTGTTTCCTCT
* * * *
157752 CTCTAAAGTGTGTAGCACTTAAATA-AAAACTAAGTTTACTCTCTT-TTTCATATGGAAATGAAA
194 -TCGAAAGTGTGTAACACTTAAACAGAAAACTAAATTTACTCTCTTCTTT-ATATGGAAATGAAA
* * *
157815 GGCCTGAAAAGAGGTTACAATTCTATATAATTAA-GGGATATAGGATTTAATATAACATTTATGT
257 GGCCTG-AAAGAGGTTACAATTCTAGATAATTAAGGGGAGACAGGATTTAATATAACATTTATGT
* *
157879 GAAAGGAAAGGATAATTACAAAAAAGGGTTTAAGGGCAAGAACTGGCT-AGAAACTAACCTAGGG
321 GAAAGGAAAGGATAATTACAAAAAAGGG-CT-----CAAG----GG-TAAGAAACTAACCTAAGG
157943 TCTTCTTAGTAATTTGGCAAGTGAGAAAA-GACAGAAAAGGACAAAAAAAGTTCAAATAGAGCCT
375 TCTTCTTAGTAATTTGGCAAGTGA-AAAAGGACAGAAAAGGACAAAAAAAGTTCAAATAGAGCCT
*
158007 CCTCATCAATCCTCAAAAGGGGCCTTTGGTAAATTCCCTGGGTCTTTCAAATACTATTTA
439 CCTCATCAATCCTCAAAAGGGGCCTTTGGTAAATTCCCTGGGTCTTTCAAATAATATTTA
158067 GTATATATAT
Statistics
Matches: 457, Mismatches: 31, Indels: 34
0.88 0.06 0.07
Matches are distributed among these distances:
521 3 0.01
522 93 0.20
523 104 0.23
524 2 0.00
527 1 0.00
528 4 0.01
532 245 0.54
533 5 0.01
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.32
Consensus pattern (525 bp):
AATCTACTTCTTTGAACAAATTTCTATTCGAATTAAATTATTTGATACGTAGAAAATTTCGAAAG
TAATATGATCTTAAATGTGTTGCATCTTTAAAAGGCTATACTATTAACATTGAGCATACTATTAG
CAATAAATAGAAAATATTAGTTTGTACATGGACATGTGCAATAGCTTCAATTTTGTTTCCTCTTC
GAAAGTGTGTAACACTTAAACAGAAAACTAAATTTACTCTCTTCTTTATATGGAAATGAAAGGCC
TGAAAGAGGTTACAATTCTAGATAATTAAGGGGAGACAGGATTTAATATAACATTTATGTGAAAG
GAAAGGATAATTACAAAAAAGGGCTCAAGGGTAAGAAACTAACCTAAGGTCTTCTTAGTAATTTG
GCAAGTGAAAAAGGACAGAAAAGGACAAAAAAAGTTCAAATAGAGCCTCCTCATCAATCCTCAAA
AGGGGCCTTTGGTAAATTCCCTGGGTCTTTCAAATAATATTTATTAGTATTAGTATTAGGGGCGT
TCAGC
Found at i:179772 original size:11 final size:11
Alignment explanation
Indices: 179756--179803 Score: 53
Period size: 11 Copynumber: 4.3 Consensus size: 11
179746 TAAAAAGGTA
179756 AAAAGAAAAGT
1 AAAAGAAAAGT
*
179767 AAAAGAAAATTT
1 AAAAGAAAA-GT
*
179779 AAAAAAAAAGT
1 AAAAGAAAAGT
179790 AAAAGTAAAA-T
1 AAAAG-AAAAGT
179801 AAA
1 AAA
179804 TGCCAAAGGT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 18 0.58
12 13 0.42
ACGTcount: A:0.75, C:0.00, G:0.10, T:0.15
Consensus pattern (11 bp):
AAAAGAAAAGT
Found at i:179787 original size:23 final size:25
Alignment explanation
Indices: 179754--179800 Score: 80
Period size: 23 Copynumber: 2.0 Consensus size: 25
179744 GGTAAAAAGG
179754 TAAAAAGAAAAGTAAAAG-AAAATT
1 TAAAAAGAAAAGTAAAAGTAAAATT
179778 TAAAAA-AAAAGTAAAAGTAAAAT
1 TAAAAAGAAAAGTAAAAGTAAAAT
179801 AAATGCCAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 11 0.50
24 11 0.50
ACGTcount: A:0.72, C:0.00, G:0.11, T:0.17
Consensus pattern (25 bp):
TAAAAAGAAAAGTAAAAGTAAAATT
Found at i:180695 original size:32 final size:31
Alignment explanation
Indices: 180618--180696 Score: 106
Period size: 32 Copynumber: 2.5 Consensus size: 31
180608 ATCAAAAGCT
*
180618 AATCTGAACTGGAG-GTTTTTTTTGGCACAA
1 AATCTGAACTGGAGTTTTTTTTTTGGCACAA
** *
180648 AATCTGAACCAGAGTTTTTTTTTTGGCATTAA
1 AATCTGAACTGGAGTTTTTTTTTTGGCA-CAA
180680 AATCTGAACTGGAGTTT
1 AATCTGAACTGGAGTTT
180697 AGGGCCATAG
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
30 12 0.29
31 12 0.29
32 17 0.41
ACGTcount: A:0.28, C:0.13, G:0.20, T:0.39
Consensus pattern (31 bp):
AATCTGAACTGGAGTTTTTTTTTTGGCACAA
Found at i:182360 original size:331 final size:331
Alignment explanation
Indices: 181006--186971 Score: 5448
Period size: 331 Copynumber: 18.0 Consensus size: 331
180996 AAAATTATGC
181006 AAAACTGAGTCGGGG-CCTCGGAACGCGTTTTTAGCCAAAAACC------G-T-GTACACGATTT
1 AAAACTGAGTCGGGGTCC-CGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTT
* * *
181062 CTGCTAAAATTTTGAAAAAATTGACCCGAAAGTTTTTCCTCATTTTCTGGCCAAATACTTATAAG
65 CGGCTAAAATTTTGAAAAAATTGACCCGAAAGTTTTTCCTCAATTTCTGGCCAAATACTTATAAA
*
181127 AATTATATAATTCAATGCCAAAAAGGTTGAAGGGCTTTCCACGCTTCTAATATCATTTTTTAAAT
130 AATTATATAATTCAATGCCAAAAAGGTTGAAGGGTTTTCCACGCTTCTAATATCATTTTTTAAAT
* *
181192 ATTTTTTTGAATTAATTTCTATTTAAATCGAAACAAAATTCAGATACTCGTAAAATCACATACTT
195 ATTTTTTTGAATTAATTTCTATTTAAATCGAAACAAGATTCAGATACTCGTAAAATCAAATACTT
*
181257 GAATCCAATGTGGATGGGATTTGGCTGGATGAAGATAGATATTTCAAGGAGTCTGGGCGACAAAA
260 GAATCCAATGTGGATGGGATTTGGCTGGATGAATATAGATATTTCAAGGAGTCTGGGCGACAAAA
181322 AACATGG
325 AACATGG
181329 AAAACTGAGTCGGGGTCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTC
1 AAAACTGAGTCGGGGTCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTC
* * * * * * ** * * * *
181394 AGCTAAAACTTTGCAAAAACTGATCTGAAAAAATTTTCCTAAATTTTTGGCTACAATACTCATAA
66 GGCTAAAATTTTGAAAAAATTGACCCG-AAAGTTTTTCCTCAATTTCTGGCCA-AATACTTAT-A
* * * * * *
181459 AAAAATATATAATTCAACGCCAAAACA-ATGGAAGGAGTTTT-CACG-TATTTAATATCGTTTTT
128 AAAATTATATAATTCAATGCCAAAA-AGGTTGAAGG-GTTTTCCACGCT-TCTAATATC-ATTTT
*** * * * ** *
181521 CTTTCTTTTTTTTTTAAAATTTATTTCTCCTTAAATCGAAACAAGATTCAGATGCTCGTTAAAA-
189 -TTAAATATTTTTTT-GAATTAATTTCTATTTAAATCGAAACAAGATTCAGATACTCG-TAAAAT
* * * ** *** * * * **
181585 -AAATCCTTAAATCCAATGTGGCTGCTATTTAATTAGATGAATATAGATATTCCAAGAAGTCTTA
251 CAAATACTTGAATCCAATGTGGATGGGATTTGGCTGGATGAATATAGATATTTCAAGGAGTCTGG
* * **
181649 GCGCCAAAAATCATTT
316 GCGACAAAAAACATGG
* * * *
181665 AAAACTAAGTCGGGGCCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACCCAATTTC
1 AAAACTGAGTCGGGGTCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTC
* *
181730 GGCTAAAATTTTGAAAAAATTGACCCGAAAGGTTTTCCTCAATTTCTGGCCAAATACTTATGAAA
66 GGCTAAAATTTTGAAAAAATTGACCCGAAAGTTTTTCCTCAATTTCTGGCCAAATACTTATAAAA
* * *
181795 ATTATATCATTCAATTCCAAAAAGGTTGAAGGGCTTTCCACGCTTCTAATATCATTTTTT-AATA
131 ATTATATAATTCAATGCCAAAAAGGTTGAAGGGTTTTCCACGCTTCTAATATCATTTTTTAAATA
* *
181859 TTTTATTGAAATAATTTCTATTTAAATCGAAACAAGATTCAGATACTCGTAAAATCAAATACTTG
196 TTTTTTTGAATTAATTTCTATTTAAATCGAAACAAGATTCAGATACTCGTAAAATCAAATACTTG
* *
181924 AATCCAATGTAGATGGGACTTGGCTGGATGAATATAGATATTTCAAGGAGTCTGGGCGACAAAAA
261 AATCCAATGTGGATGGGATTTGGCTGGATGAATATAGATATTTCAAGGAGTCTGGGCGACAAAAA
*
181989 A-AT-T
326 ACATGG
* * * *
181993 ACGAAACTGAGTCAGGGTCCCGGAACGCGGTTTTAGCCAAAAACCGTGAAGGTTAGTATACGATT
1 A--AAACTGAGTCGGGGTCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATT
* *
182058 TCAGCTAAAATTTTGAAAAAATTAACCCGAAAGTTTTTCCTCAATTTCTGGCCAAATACTTATAA
64 TCGGCTAAAATTTTGAAAAAATTGACCCGAAAGTTTTTCCTCAATTTCTGGCCAAATACTTATAA
* *
182123 AAATTATATAACTCAATGCCAAAAAGGTTGTAGGGTTTTCCACGCTTCTAATATCATTTTTTAAA
129 AAATTATATAATTCAATGCCAAAAAGGTTGAAGGGTTTTCCACGCTTCTAATATCATTTTTTAAA
* * * *
182188 TATTTTTTTGAATTAATTTCTATTTAAATCGAAACAATATTTAGATACTCGTAAATTCATATACT
194 TATTTTTTTGAATTAATTTCTATTTAAATCGAAACAAGATTCAGATACTCGTAAAATCAAATACT
* * *
182253 TGAATCCAATATGGATGGGATTTGGCTGGATGAAGATAGATATTTCAAGGAGTCTGGGTGACAAA
259 TGAATCCAATGTGGATGGGATTTGGCTGGATGAATATAGATATTTCAAGGAGTCTGGGCGACAAA
182318 AAACATGG
324 AAACATGG
* *
182326 AAAACTGAGTCGGGGTCCCGAAACGCGTTTTTAGCCAAAAACCGTGACGGTTAGTACACGATTTC
1 AAAACTGAGTCGGGGTCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTC
* * * * * * ** * * *
182391 AGCTAAAACTTTGCAAAAACTGATCTGAAAAAATTTTCCTAAATTTTTGGCCACAATACTCATAA
66 GGCTAAAATTTTGAAAAAATTGACCCG-AAAGTTTTTCCTCAATTTCTGGCCA-AATACTTATAA
* * * * * * *
182456 AAGGA-TATATAATTCAACGCCAAAACGATGGAAGGAGTTTT-AAC-ATATTTAATATCGTTATT
129 AA--ATTATATAATTCAATGCCAAAAAGGTTGAAGG-GTTTTCCACGCT-TCTAATATC---ATT
** * * * ** *
182518 CTTTT-CTTTTTTTTTTCAAATTTATTTCTCCTTAAATCGAAACAAGATTCAGATGCTCGTTAAA
187 -TTTTAAATATTTTTTT-GAATTAATTTCTATTTAAATCGAAACAAGATTCAGATACTCG-TAAA
* * * * ** * ** * * * *
182582 A-AAAATCCTTAAATCCAATGTGGCTGCTATTAGATTAGATGAATATAGATATTCCAAGAAGCCT
249 ATCAAATACTTGAATCCAATGTGGATGGGATTTGGCTGGATGAATATAGATATTTCAAGGAGTCT
** * * * *
182646 TAGTGCCAAAAATCATGT
314 GGGCGACAAAAAACATGG
* * *
182664 AAAACTGAATCGGGGCCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGTTTAGTACACGATTTC
1 AAAACTGAGTCGGGGTCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTC
182729 GGCTAAAATTTTGAAAAAATTGACCCGAAAGTTTTTCCTCAATTTCTGGCCAAATACTTATAAAA
66 GGCTAAAATTTTGAAAAAATTGACCCGAAAGTTTTTCCTCAATTTCTGGCCAAATACTTATAAAA
*
182794 ATTATATAATTCAATGCCAAAAAGGTTGAAGGGCTTTCCACGCTTCTAATATCATTTTTTAAATA
131 ATTATATAATTCAATGCCAAAAAGGTTGAAGGGTTTTCCACGCTTCTAATATCATTTTTTAAATA
* *
182859 TTTTTTTGAATTAATTTCTATTTAAATCGAAACAAGATTTAGATACTCGTAAAATCACATACTTG
196 TTTTTTTGAATTAATTTCTATTTAAATCGAAACAAGATTCAGATACTCGTAAAATCAAATACTTG
*
182924 AATCCAATGTGGATGGGATTTTGCTGGATGAATATAGATATTTCAAGGAGTCTGGGCGACAAAAA
261 AATCCAATGTGGATGGGATTTGGCTGGATGAATATAGATATTTCAAGGAGTCTGGGCGACAAAAA
182989 ACATGCG
326 ACATG-G
* * * * * *
182996 -AAACTGAGTCGGGGTTCCAGAATGCGTTTTTAGCTAAAAACCATGATGGTTAGTACACGATTTT
1 AAAACTGAGTCGGGGTCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTC
* * * * * * ** * * *
183060 GTCTAAAACTTTGCAAAAACTGATCTGAAAAAATTTTCCTCAATTTTTTGCCACAATACTCATAA
66 GGCTAAAATTTTGAAAAAATTGACCCG-AAAGTTTTTCCTCAATTTCTGGCCA-AATACTTATAA
* * * * * * * * * * *
183125 AAAATATAAAATTTAACGCCAAAACGATGGAAGGATTTTTCAC-ATATTTAATATCA----TT--
129 AAATTATATAATTCAATGCCAAAAAGGTTGAAGGGTTTTCCACGCT-TCTAATATCATTTTTTAA
** * * *
183183 -T-TTTTTTCAAATTTAA-TTCTCA-TTAAATCGAAACAAGATTTAGATGCTCGTTAAAA-AAAA
193 ATATTTTTTTGAA-TTAATTTCT-ATTTAAATCGAAACAAGATTCAGATACTCG-TAAAATCAAA
* * * ** ** * * * * ** *
183243 TCCTTAAATCCAATGTGGCTGCTATTTGATTAGAAGAATATAGATATTCCAAGAAGTCTTAGCGC
255 TACTTGAATCCAATGTGGATGGGATTTGGCTGGATGAATATAGATATTTCAAGGAGTCTGGGCGA
* *
183308 CAAAAATCATGC
320 CAAAAAACATGG
* * * * *
183320 AAAACTGAGTCAGGGCCCCGGAACGCGTTTTTAGTCAAAAACCGTGATAGTTAGTACACGTTTTC
1 AAAACTGAGTCGGGGTCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTC
* *
183385 GGCTAAAACTTTGAAAAAAATTGACCCGAAAGGTTTTCCTCAATTTCTGGCCAAATACTTATAAA
66 GGCTAAAATTTTG-AAAAAATTGACCCGAAAGTTTTTCCTCAATTTCTGGCCAAATACTTATAAA
* * ** * * *** * *
183450 AATGATATACTTCAATGCCAAAAAGGTTGAAACG-ATGCCAAAAAAATATATAATTCAACGCCGA
130 AATTATATAATTCAATGCCAAAAAGGTTGAAGGGTTTTCC---ACGCT-TCTAA-T--A--TC--
**** * * * * * *** ** ** * *
183514 AACGATGAAAGGATTTTTCTCGTATTTAATATCGTTCTTCTTTTTTTTTTTAAATTTA-TTTCTC
184 ATTTTTTAAA-TATTTTT-TTG-AATT-A-A----T-TTCTATTTAAATCGAAA-CAAGATTC-A
** * * * * * *** * ** *** *
183578 CTTAAATCGAAACAAGATTCAGATGCTCATTAAAAAAAATACTTAAATCCAATGTGGCTGCTCTT
237 GAT-ACTCG-TA-AA-A-TCAAAT--AC-TTGAATCCAAT--GTGGATGGGATTTGGCTG-----
* * ** * * *
183643 TGATTATATGAATATAGATATTCCAAGAAGTCTTAGTGCCAAAAATA-ATGC
287 -G---AT--GAATATAGATATTTCAAGGAGTCTGGGCGACAAAAA-ACATGG
* * * * *
183694 AAAACAGAGCCGGGG-CTCCAGAACGCATTTTTAGCCAAAAATCGTGATGGTTAGTACACGATTT
1 AAAACTGAGTCGGGGTC-CCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTT
* * *
183758 CGGCTAAAATTTTGAAAAAATTGACGCGATTATTTTTTCCTCAATTTCTGGCCAAATACTTATAA
65 CGGCTAAAATTTTGAAAAAATTGACCCGA-AAGTTTTTCCTCAATTTCTGGCCAAATACTTATAA
* *
183823 GAATTATATAATTCAATACC-AAAAGGATTGAAGGG-TTTCCACGCTTCTAATATCATTTTTT-A
129 AAATTATATAATTCAATGCCAAAAAGG-TTGAAGGGTTTTCCACGCTTCTAATATCATTTTTTAA
* *
183885 ATATTTTTTTGAATTAATTTCTATTTAAACCGAAATAAGATTCAGATACTCGTAAAATCAAATAC
193 ATATTTTTTTGAATTAATTTCTATTTAAATCGAAACAAGATTCAGATACTCGTAAAATCAAATAC
*
183950 TTGAATCCAATGTGGATGGGATTTGACTGGATGAATATAGATATTTCAAGGAGTCTGGGCGACGA
258 TTGAATCCAATGTGGATGGGATTTGGCTGGATGAATATAGATATTTCAAGGAGTCTGGGCGAC--
* *
184015 AAAAAAAAAGCG
321 AAAAAACATG-G
* * * *
184027 -AAACTGAGTCGGGGTCCCAGAACGCGTTTTTAGCAAAAAACCGTGATGGTTAGTAAACGTTTTC
1 AAAACTGAGTCGGGGTCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTC
*
184091 GGCTAAAATTTTGAAAAAATTGACCCGAAAGTTTTT-CTCAATTTCTGGCCAAATAGTTATAAAA
66 GGCTAAAATTTTGAAAAAATTGACCCGAAAGTTTTTCCTCAATTTCTGGCCAAATACTTATAAAA
*
184155 ATTATATAACTCAATGCCAAAAAGGTTGAAGGGTTTTCCACGCTTCTAATATCATTTTTTAAATA
131 ATTATATAATTCAATGCCAAAAAGGTTGAAGGGTTTTCCACGCTTCTAATATCATTTTTTAAATA
* * *
184220 TATTTTTGAATATAATTTCTATTTAAATCGAAACAAGATTCAAATACTCGTAAAATCACATACTT
196 TTTTTTTGAAT-TAATTTCTATTTAAATCGAAACAAGATTCAGATACTCGTAAAATCAAATACTT
* * * *
184285 GAATCCAATGTGGAAGGGATTTGGCAGGATGAAAATAGATATTTCAAGGAGTCTGTGCGACAAAA
260 GAATCCAATGTGGATGGGATTTGGCTGGATGAATATAGATATTTCAAGGAGTCTGGGCGACAAAA
*
184350 ATCATGCG
325 AACATG-G
* * *
184358 -AAACTGAGTCGGAGTCTCGGAACGCGTTTTTAGGCAAAAACCGTGATGGTTAGTACACGATTTC
1 AAAACTGAGTCGGGGTCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTC
* * * * * * ** * *
184422 AGCTAAAACTTTGCAAAAACTGATCTGAAAAAATTTTCCACAATTTTTGGCCACAATACTTATAA
66 GGCTAAAATTTTGAAAAAATTGACCCG-AAAGTTTTTCCTCAATTTCTGGCCA-AATACTTATAA
* * * * * * * **
184487 AAA-AATATTAAATTCAACGCCAAAACGATGGAAGGATTTTTCACGTCTT-T-AT-T-ATCGTTT
129 AAATTATA-T-AATTCAATGCCAAAAAGGTTGAAGGGTTTTCCACG-CTTCTAATATCATTTTTT
** * * * *
184547 ---T-TTTTTTCAAATTTATTTCTCA-TTAAATTGAAACAAGATTCAGATGCTCGTTAAAA-AAA
191 AAATATTTTTTTGAATTAATTTCT-ATTTAAATCGAAACAAGATTCAGATACTCG-TAAAATCAA
* * * ** ** * * * **
184606 ATCCTTAAATCCAATGTGGCTGCTATTTGATTAGATGAATATAGATATTCCAAGAAGTCTTAGCG
254 ATACTTGAATCCAATGTGGATGGGATTTGGCTGGATGAATATAGATATTTCAAGGAGTCTGGGCG
* * *
184671 CCAAAAATCATGC
319 ACAAAAAACATGG
* * *
184684 AAAACTGAGTCGAGGCCCCGGAACGCGTTTTTAGCCAAAAACCGTAATGGTTAGTACAC-ATTTT
1 AAAACTGAGTCGGGGTCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGA-TTT
* * * * *
184748 TGGCTAAAATTTAGAAAACATTGACTCGAAAGGTTTTCCTCAATTTCTGGCCAAATACTTATAAA
65 CGGCTAAAATTTTGAAAAAATTGACCCGAAAGTTTTTCCTCAATTTCTGGCCAAATACTTATAAA
* * * * *
184813 AATTATTTACTTCAATGCCAAAAAGGTTGAAGGGCTTTCCACGCGTCAAATATCATTTTTTAAAT
130 AATTATATAATTCAATGCCAAAAAGGTTGAAGGGTTTTCCACGCTTCTAATATCATTTTTTAAAT
* * * *
184878 ATTTTTTTTGAATTAAATTCCATTTAAATTGAAACAAGATTCAGATACTCGTAAAATCACATACT
195 A-TTTTTTTGAATTAATTTCTATTTAAATCGAAACAAGATTCAGATACTCGTAAAATCAAATACT
*
184943 TGAATCCAATGTGGATGGGATTTGGCCGGATGAATATAGATATTTCAAGGAGTCTGGGCGA-AAA
259 TGAATCCAATGTGGATGGGATTTGGCTGGATGAATATAGATATTTCAAGGAGTCTGGGCGACAAA
185007 AAACATGCG
324 AAACATG-G
* *
185016 -AAACAT-AG-CCGGGTCCTGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTT
1 AAAAC-TGAGTCGGGGTCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTT
* ** * * * * *
185078 CGGCTAAAACTTTGCTAAAACTGATCTGAAAAATTTTTCCTCAATTTTTGG-C-----C------
65 CGGCTAAAATTTTGAAAAAATTGACCCG-AAAGTTTTTCCTCAATTTCTGGCCAAATACTTATAA
* *
185131 ----------A--CAATGCCAAAATGGTTGAAGGGCTTTTCAACGCTTCTAATATCATTTTTTAA
129 AAATTATATAATTCAATGCCAAAAAGGTTGAAGGG-TTTTCCACGCTTCTAATATCATTTTTTAA
* *
185184 ATATTTTTTTGAATTAATTTCTATTTAAATCGAAACAAGATTCAGATACTCGTAAAATGACATAC
193 ATATTTTTTTGAATTAATTTCTATTTAAATCGAAACAAGATTCAGATACTCGTAAAATCAAATAC
* * * * *
185249 TTGAATCCAATGTGGATGGGATTTGGCTGGGTGGAGATAGATATTTCCAGGAGTCTGGGCGATAA
258 TTGAATCCAATGTGGATGGGATTTGGCTGGATGAATATAGATATTTCAAGGAGTCTGGGCGACAA
185314 AAAACATGCG
323 AAAACATG-G
* *
185324 -AAACTGAGTCGGGGTCCCGGAACGCGTTTTTAGCCAAAAACCGAGATGGTTAGTACACGATTTA
1 AAAACTGAGTCGGGGTCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTC
* * * * * *** * *
185388 AGCTAAAATTTTGCAAAAACTGATCGGAAAAAAATTTCCTCAATTTTTGGCCAGAATACTAATTA
66 GGCTAAAATTTTGAAAAAATTGACCCG-AAAGTTTTTCCTCAATTTCTGGCCA-AATACTTA-TA
* * * * * * * * * *
185453 AAAAATAGAAAATTCAACGCC-AAAACGATGAAGGATTTTTCACG-TATTTAATATCGTTTTTCT
128 AAAATTATATAATTCAATGCCAAAAAGGTTGAAGGGTTTTCCACGCT-TCTAATATCATTTTT-T
** * * ** ** * *
185516 -TTTTTTTTTTTCAAATTTTTTTCCTCCTTAAATCGAAACAAGATTCAGATGCTTGTTAAAA-CA
191 AAATATTTTTTT-GAATTAATTT-CTATTTAAATCGAAACAAGATTCAGATACTCG-TAAAATCA
* * * ** ** * * * **
185579 AATCCTTAAATCCAATGTGGCTGCTATTTGATTAGATGAATATAGATA-TTCTAAGAATTCTTAG
253 AATACTTGAATCCAATGTGGATGGGATTTGGCTGGATGAATATAGATATTTC-AAGGAGTCTGGG
* * * *
185643 CGCCGAAAATCATGC
317 CGACAAAAAACATGG
* * *
185658 AAAACTGAGTCGGGGCCCCGGAACGCGTTTTTAGCCAAAAATCGTGATGGTTAGTACCCGATTTC
1 AAAACTGAGTCGGGGTCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTC
* * * *
185723 GTCTAAAATTTTGAAAAAATTGATCCTAAAGTTTTTACTCAATTTCTGGCCAAATACTTATAAAA
66 GGCTAAAATTTTGAAAAAATTGACCCGAAAGTTTTTCCTCAATTTCTGGCCAAATACTTATAAAA
* *
185788 ATTATATAATTCAATGCCAAAAAGGTTGAAGGGCTTTCCACGCTTTTAATATCATTTTTTAAATA
131 ATTATATAATTCAATGCCAAAAAGGTTGAAGGGTTTTCCACGCTTCTAATATCATTTTTTAAATA
** * * *
185853 TTTTTTAAAAATAATTTCTATTTAAATCGAAACAAGATTCAGATACTTGTAAAATCACATACTTG
196 TTTTTTTGAATTAATTTCTATTTAAATCGAAACAAGATTCAGATACTCGTAAAATCAAATACTTG
* * * *
185918 AATCCAATGTGGATGGGATTTTGCCGGATGAATATAGATATTTCAAGGAGTCTGGGAGA-TAAAA
261 AATCCAATGTGGATGGGATTTGGCTGGATGAATATAGATATTTCAAGGAGTCTGGGCGACAAAAA
185982 ACATGCG
326 ACATG-G
* * * *
185989 -AAACTGAGTCGAGGTCCTGGAATGCGTTTTTAGCCAAAAACCGTGATGGTTAGTATACGATTTC
1 AAAACTGAGTCGGGGTCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTC
* * * * *** ** * * *
186053 AGCTAAAACTTTGCAAAAACTGATATGAATAAATTTTCCTCAATTTTTGGCTACAATACTCATAA
66 GGCTAAAATTTTGAAAAAATTGACCCGAA-AGTTTTTCCTCAATTTCTGGCCA-AATACTTAT-A
* * * * * * * *
186118 AAAAATATAAAATTCAACGCCAAAACGATGGAAGGATTTTTCACGTCTT-TAATATCATTTTTCT
128 AAAATTATATAATTCAATGCCAAAAAGGTTGAAGGGTTTTCCACG-CTTCTAATATCATTTTT-T
* * * * * * *
186182 -TATTTTTTTTTCAAATTTATTGCTCA-TTAAATCGAAACAAGATTTAGATGCTCGTTAAAA--A
191 AAATATTTTTTT-GAATTAATTTCT-ATTTAAATCGAAACAAGATTCAGATACTCG-TAAAATCA
* * * ** ** * * * * **
186243 AATCCTTAAATCCAATGTGGCTGCTATTTGATTAGATGAATGTAGATATTCCAAGAAGTCTTAGC
253 AATACTTGAATCCAATGTGGATGGGATTTGGCTGGATGAATATAGATATTTCAAGGAGTCTGGGC
* * *
186308 GCCAAAAATCATGC
318 GACAAAAAACATGG
* *
186322 AAAACTGAGTCGGGGCCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACCCGATTTC
1 AAAACTGAGTCGGGGTCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTC
*
186387 GGCTAAAATTTTGAAAAAATTGACCCGAAAGTTTTTCCTCAATTTCTTGCCAAATACTTATAAAA
66 GGCTAAAATTTTGAAAAAATTGACCCGAAAGTTTTTCCTCAATTTCTGGCCAAATACTTATAAAA
* * * ** * *
186452 ATTAAATAATTCAATGACAAAAAGATTGAAGGGCCTTCCACGCTTTTAATATCATTTTATAAATA
131 ATTATATAATTCAATGCCAAAAAGGTTGAAGGGTTTTCCACGCTTCTAATATCATTTTTTAAATA
186517 TTTTTTTGAATTAATTTCTATTTAAATCGAAACAAGATTCAGATACTCGTAAAAT-AACATACTT
196 TTTTTTTGAATTAATTTCTATTTAAATCGAAACAAGATTCAGATACTCGTAAAATCAA-ATACTT
*
186581 GAATCCAATGTGGATGGGATTTTGCTGGAT-AAGTATAGATATTTCAAGGAGTCTGGGCGACAAA
260 GAATCCAATGTGGATGGGATTTGGCTGGATGAA-TATAGATATTTCAAGGAGTCTGGGCGACAAA
186645 AAACATGCG
324 AAACATG-G
* ** * * *
186654 -AAACTGAGTCGGTGTCCCGGAACAAGTTTTTAGCCAAAAA--TTG-TGATAACGTACACGATTT
1 AAAACTGAGTCGGGGTCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTA-GTACACGATTT
* * *
186715 CGGCTAAAATTTTGAAAAAATTGACTCAAAAGTTTTTCCTCAATTTTTGG-C-----C-------
65 CGGCTAAAATTTTGAAAAAATTGACCCGAAAGTTTTTCCTCAATTTCTGGCCAAATACTTATAAA
* * *
186767 ---------A--CAATGCCAAAATGGTTGAAGGGCTTTTCAACGTTTCTAATATCATTTTTTAAA
130 AATTATATAATTCAATGCCAAAAAGGTTGAAGGG-TTTTCCACGCTTCTAATATCATTTTTTAAA
*
186821 TATTTTTTTGAATTAA--TCTATTTAAATCGAAACAAGATTCATATACTCGTAAAAT-AAATACT
194 TATTTTTTTGAATTAATTTCTATTTAAATCGAAACAAGATTCAGATACTCGTAAAATCAAATACT
** *
186883 TGAATCCAATGTGGATGGGATTTTACTGGATGAAAATAGATATTTCAAGGAGTCTGGGCGAC-AA
259 TGAATCCAATGTGGATGGGATTTGGCTGGATGAATATAGATATTTCAAGGAGTCTGGGCGACAAA
186947 AAACAATGCG
324 AAAC-ATG-G
186957 -AAACTGAGTCGGGGT
1 AAAACTGAGTCGGGGT
186972 TCC
Statistics
Matches: 4562, Mismatches: 868, Indels: 446
0.78 0.15 0.08
Matches are distributed among these distances:
302 6 0.00
303 81 0.02
304 42 0.01
305 19 0.00
306 40 0.01
307 138 0.03
308 46 0.01
309 95 0.02
310 1 0.00
316 1 0.00
323 45 0.01
324 62 0.01
325 205 0.04
326 47 0.01
327 179 0.04
328 27 0.01
329 106 0.02
330 520 0.11
331 827 0.18
332 344 0.08
333 438 0.10
334 274 0.06
335 275 0.06
336 174 0.04
337 68 0.01
338 186 0.04
339 4 0.00
341 10 0.00
343 12 0.00
344 5 0.00
345 2 0.00
346 6 0.00
347 1 0.00
348 2 0.00
349 1 0.00
350 4 0.00
351 3 0.00
352 25 0.01
353 3 0.00
354 4 0.00
355 2 0.00
356 1 0.00
357 1 0.00
358 4 0.00
359 3 0.00
360 3 0.00
361 14 0.00
362 2 0.00
363 10 0.00
365 1 0.00
367 1 0.00
369 2 0.00
370 4 0.00
371 2 0.00
372 1 0.00
373 21 0.00
374 162 0.04
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.32
Consensus pattern (331 bp):
AAAACTGAGTCGGGGTCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTC
GGCTAAAATTTTGAAAAAATTGACCCGAAAGTTTTTCCTCAATTTCTGGCCAAATACTTATAAAA
ATTATATAATTCAATGCCAAAAAGGTTGAAGGGTTTTCCACGCTTCTAATATCATTTTTTAAATA
TTTTTTTGAATTAATTTCTATTTAAATCGAAACAAGATTCAGATACTCGTAAAATCAAATACTTG
AATCCAATGTGGATGGGATTTGGCTGGATGAATATAGATATTTCAAGGAGTCTGGGCGACAAAAA
ACATGG
Found at i:182698 original size:669 final size:662
Alignment explanation
Indices: 181002--186971 Score: 4989
Period size: 669 Copynumber: 9.0 Consensus size: 662
180992 GTAAAAAATT
*
181002 ATGCAAAACTGAGTCGGGG-CCTCGGAACGCGTTTTTAGCCAAAAACC------G-T-GTACACG
1 ATGCGAAACTGAGTCGGGGTCC-CGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACG
* * * * * * **
181058 ATTTCTGCTAAAATTTTGAAAAAATTGACCCG-AAAGTTTTTCCTC-ATTTTCTGGCCA-AATAC
65 ATTTCGGCTAAAACTTTGCAAAAACTGATCTGAAAAAATTTTCCTCAATTTT-TGGCCACAATAC
* * * * * * * *
181120 TTATAAGAATTATATAATTCAATGCCAAAAAGGTTGAAGG-GCTTTCCACGCTTCTAATATCATT
129 TTATAA-AAATATATAATTCAACGCCAAAACGATGGAAGGAG-TTTTCAC-ATTTTAATATCATT
* * * *
181184 TTTTAAATATTTTTTT-GAATTAATTTCT-ATTTAAATCGAAACAAAATTCAGATACTCGTAAAA
191 TTTT-AATTTTTTTTTCAAATTTATTTCTCA-TTAAATCGAAACAAGATTCAGATACTCGTAAAA
* * * * * * * * *
181247 TCACATACTTGAATCCAATGTGGATGGGATTTGGCTGGATGAAGATAGATATTTCAAGGAGTCTG
254 TAAAATACTTAAATCCAATGTGGATGCGATTTGACTAGATGAATATAGATATTCCAAGAAGTCTG
* * * * * *
181312 GGCGACAAAAAACATGGAAAACTGAGTCGGGGTCCCGGAACGCGTTTTTAGCCAAAAACCGTGAT
319 AGCGCCAAAAATCATGCAAAACTGAGTCGGGGCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAA
* * * * * * ** * *
181377 GGTTAGTACACGATTTCAGCTAAAACTTTGCAAAAACTGATCTGAAAAAATTTTCCTAAATTTTT
384 GGTTAGTACACGATTTCGGCTAAAATTTTGAAAAAATTGACCCG-AAAGTTTTTCCTCAATTTCT
* * * * * * *
181442 GGCTACAATACTCATAAAAAAATATATAATTCAACGCCAAAACA-ATGGAAGGAGTTTT-CACG-
448 GGCCA-AATACTTAT-AAAAATTATATAACTCAATGCCAAAA-AGGTTGAAGG-GTTTTCCACGC
* * *** * * * **
181504 TATTTAATATCGTTTTTCTTTCTTTTTTTTTTAAAATTTATTTCTCCTTAAATCGAAACAAGATT
509 T-TCTAATATC-ATTTT-TTAAATATTTTTTT-GAATTAATTTCTATTTAAATCGAAACAAGATT
* * * * * ** *** *
181569 CAGATGCTCGTTAAAA--AAATCCTTAAATCCAATGTGGCTGCTATTTAATTAGATGAATATAGA
570 CAGATACTCG-TAAAATCACATACTTGAATCCAATGTGGATGGGATTTGGCTGGATGAATATAGA
* * ** * *
181632 TATTCCAAGAAGTCTTAGCGCCAAAAATC
634 TATTTCAAGGAGTCTGGGCGACAAAAAAC
*** * * * *
181661 ATTTAAAACTAAGTCGGGGCCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACCCAA
1 ATGCGAAACTGAGTCGGGGTCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGA
* * * * * ** *
181726 TTTCGGCTAAAATTTTGAAAAAATTGACCCG-AAAGGTTTTCCTCAATTTCTGGCCA-AATACTT
66 TTTCGGCTAAAACTTTGCAAAAACTGATCTGAAAAAATTTTCCTCAATTTTTGGCCACAATACTT
* * ** * * * * * *
181789 ATGAAAATTATATCATTCAATTCCAAAAAGGTTGAAGG-GCTTTCCACGCTTCTAATATCATTTT
131 AT-AAAAATATATAATTCAACGCCAAAACGATGGAAGGAG-TTTTCAC-ATTTTAATATCATTTT
* * * * *
181853 TTAATATTTTATTGAAA-TAATTTCT-ATTTAAATCGAAACAAGATTCAGATACTCGTAAAATCA
193 TTAATTTTTTTTTCAAATTTATTTCTCA-TTAAATCGAAACAAGATTCAGATACTCGTAAAATAA
* * * * * * * * *
181916 AATACTTGAATCCAATGTAGATGGGACTTGGCTGGATGAATATAGATATTTCAAGGAGTCTGGGC
257 AATACTTAAATCCAATGTGGATGCGATTTGACTAGATGAATATAGATATTCCAAGAAGTCTGAGC
* * * * * * *
181981 GACAAAAA-AATTACGAAACTGAGTCAGGGTCCCGGAACGCGGTTTTAGCCAAAAACCGTGAAGG
322 GCCAAAAATCA-TGCAAAACTGAGTCGGGGCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAAGG
* * *
182045 TTAGTATACGATTTCAGCTAAAATTTTGAAAAAATTAACCCGAAAGTTTTTCCTCAATTTCTGGC
386 TTAGTACACGATTTCGGCTAAAATTTTGAAAAAATTGACCCGAAAGTTTTTCCTCAATTTCTGGC
*
182110 CAAATACTTATAAAAATTATATAACTCAATGCCAAAAAGGTTGTAGGGTTTTCCACGCTTCTAAT
451 CAAATACTTATAAAAATTATATAACTCAATGCCAAAAAGGTTGAAGGGTTTTCCACGCTTCTAAT
* *
182175 ATCATTTTTTAAATATTTTTTTGAATTAATTTCTATTTAAATCGAAACAATATTTAGATACTCGT
516 ATCATTTTTTAAATATTTTTTTGAATTAATTTCTATTTAAATCGAAACAAGATTCAGATACTCGT
* * * *
182240 AAATTCATATACTTGAATCCAATATGGATGGGATTTGGCTGGATGAAGATAGATATTTCAAGGAG
581 AAAATCACATACTTGAATCCAATGTGGATGGGATTTGGCTGGATGAATATAGATATTTCAAGGAG
*
182305 TCTGGGTGACAAAAAAC
646 TCTGGGCGACAAAAAAC
* *
182322 ATG-GAAAACTGAGTCGGGGTCCCGAAACGCGTTTTTAGCCAAAAACCGTGACGGTTAGTACACG
1 ATGCG-AAACTGAGTCGGGGTCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACG
* *
182386 ATTTCAGCTAAAACTTTGCAAAAACTGATCTGAAAAAATTTTCCTAAATTTTTGGCCACAATACT
65 ATTTCGGCTAAAACTTTGCAAAAACTGATCTGAAAAAATTTTCCTCAATTTTTGGCCACAATACT
* *
182451 CATAAAAGGATATATAATTCAACGCCAAAACGATGGAAGGAGTTTTAACATATTTAATATCGTTA
130 TATAAAA--ATATATAATTCAACGCCAAAACGATGGAAGGAGTTTTCACAT-TTTAATATC---A
** * *
182516 TTCTTTTCTTTTTTTTTTCAAATTTATTTCTCCTTAAATCGAAACAAGATTCAGATGCTCGTTAA
189 TT-TTTTAATTTTTTTTTCAAATTTATTTCTCATTAAATCGAAACAAGATTCAGATACTCG-TAA
* * * * * *
182581 AA-AAAATCCTTAAATCCAATGTGGCTGCTATTAGATTAGATGAATATAGATATTCCAAGAAGCC
252 AATAAAATACTTAAATCCAATGTGGATGCGATTTGACTAGATGAATATAGATATTCCAAGAAGTC
* * * *
182645 TTAGTGCCAAAAATCATGTAAAACTGAATCGGGGCCCCGGAACGCGTTTTTAGCCAAAAACCGTG
317 TGAGCGCCAAAAATCATGCAAAACTGAGTCGGGGCCCCGGAACGCGTTTTTAGCCAAAAACCGTG
* *
182710 ATGTTTAGTACACGATTTCGGCTAAAATTTTGAAAAAATTGACCCGAAAGTTTTTCCTCAATTTC
382 AAGGTTAGTACACGATTTCGGCTAAAATTTTGAAAAAATTGACCCGAAAGTTTTTCCTCAATTTC
* *
182775 TGGCCAAATACTTATAAAAATTATATAATTCAATGCCAAAAAGGTTGAAGGGCTTTCCACGCTTC
447 TGGCCAAATACTTATAAAAATTATATAACTCAATGCCAAAAAGGTTGAAGGGTTTTCCACGCTTC
*
182840 TAATATCATTTTTTAAATATTTTTTTGAATTAATTTCTATTTAAATCGAAACAAGATTTAGATAC
512 TAATATCATTTTTTAAATATTTTTTTGAATTAATTTCTATTTAAATCGAAACAAGATTCAGATAC
*
182905 TCGTAAAATCACATACTTGAATCCAATGTGGATGGGATTTTGCTGGATGAATATAGATATTTCAA
577 TCGTAAAATCACATACTTGAATCCAATGTGGATGGGATTTGGCTGGATGAATATAGATATTTCAA
182970 GGAGTCTGGGCGACAAAAAAC
642 GGAGTCTGGGCGACAAAAAAC
* * * * *
182991 ATGCGAAACTGAGTCGGGGTTCCAGAATGCGTTTTTAGCTAAAAACCATGATGGTTAGTACACGA
1 ATGCGAAACTGAGTCGGGGTCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGA
* * * *
183056 TTTTGTCTAAAACTTTGCAAAAACTGATCTGAAAAAATTTTCCTCAATTTTTTGCCACAATACTC
66 TTTCGGCTAAAACTTTGCAAAAACTGATCTGAAAAAATTTTCCTCAATTTTTGGCCACAATACTT
* * *
183121 ATAAAAAATATAAAATTTAACGCCAAAACGATGGAAGGATTTTTCACATATTTAATATC------
131 AT-AAAAATATATAATTCAACGCCAAAACGATGGAAGGAGTTTTCACAT-TTTAATATCATTTTT
* * *
183180 --ATTTTTTTTTCAAATTTAATTCTCATTAAATCGAAACAAGATTTAGATGCTCGTTAAAA-AAA
194 TAATTTTTTTTTCAAATTTATTTCTCATTAAATCGAAACAAGATTCAGATACTCG-TAAAATAAA
* * * * * *
183242 ATCCTTAAATCCAATGTGGCTGCTATTTGATTAGAAGAATATAGATATTCCAAGAAGTCTTAGCG
258 ATACTTAAATCCAATGTGGATGCGATTTGACTAGATGAATATAGATATTCCAAGAAGTCTGAGCG
* *
183307 CCAAAAATCATGCAAAACTGAGTCAGGGCCCCGGAACGCGTTTTTAGTCAAAAACCGTGATA-GT
323 CCAAAAATCATGCAAAACTGAGTCGGGGCCCCGGAACGCGTTTTTAGCCAAAAACCGTGA-AGGT
* * *
183371 TAGTACACGTTTTCGGCTAAAACTTTGAAAAAAATTGACCCGAAAGGTTTTCCTCAATTTCTGGC
387 TAGTACACGATTTCGGCTAAAATTTTG-AAAAAATTGACCCGAAAGTTTTTCCTCAATTTCTGGC
* *
183436 CAAATACTTATAAAAATGATAT-ACTTCAATGCCAAAAAGGTTGAAACGATGCCAAAAAAATATA
451 CAAATACTTATAAAAATTATATAAC-TCAATGCCAAAAAGGTTG-AA-G--G----------GT-
* ** **
183500 TAATTCAACGCCGAAACGATGAA-AGGATTTTTCTCGTATTTAATATCGTTCTTCTTTTTTTTTT
500 T--TTCCACG-C--TTC--T-AATATCA-TTTT-T--TA---AATA-------------TTTTTT
* * ** * * * * *
183564 TAAATTTATTTCTCCTTAAATCGAAACAAGATTCAGATGCTCATTAAAA-AAAATACTTAAATCC
537 TGAATTAATTTCTATTTAAATCGAAACAAGATTCAGATACTC-GTAAAATCACATACTTGAATCC
* *** ** ** * * ** * *
183628 AATGTGGCTGCTCTTTGATTATATGAATATAGATATTCCAAGAAGTCTTAGTGCCAAAAATA-
601 AATGTGGATGGGATTTGGCTGGATGAATATAGATATTTCAAGGAGTCTGGGCGACAAAAA-AC
* * * * * *
183690 ATGCAAAACAGAGCCGGGG-CTCCAGAACGCATTTTTAGCCAAAAATCGTGATGGTTAGTACACG
1 ATGCGAAACTGAGTCGGGGTC-CCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACG
* * * * ** ** *
183754 ATTTCGGCTAAAATTTTGAAAAAATTGA-CGCGATTATTTTTTCCTCAATTTCTGGCCA-AATAC
65 ATTTCGGCTAAAACTTTGCAAAAACTGATC-TGAAAAAATTTTCCTCAATTTTTGGCCACAATAC
* ** * * * * *
183817 TTATAAGAATTATATAATTCAATACCAAAAGGATTGAAGG-GTTTCCACGCTTCTAATATCATTT
129 TTATAA-AAATATATAATTCAACGCCAAAACGATGGAAGGAGTTTTCAC-ATTTTAATATCATTT
* * * * * *
183881 TTTAATATTTTTTT-GAATTAATTTCT-ATTTAAACCGAAATAAGATTCAGATACTCGTAAAATC
192 TTTAATTTTTTTTTCAAATTTATTTCTCA-TTAAATCGAAACAAGATTCAGATACTCGTAAAATA
* * * * * *
183944 AAATACTTGAATCCAATGTGGATGGGATTTGACTGGATGAATATAGATATTTCAAGGAGTCTGGG
256 AAATACTTAAATCCAATGTGGATGCGATTTGACTAGATGAATATAGATATTCCAAGAAGTCTGAG
* ** * * * * * *
184009 CGACGAAAAAAAAAAGCGAAACTGAGTCGGGGTCCCAGAACGCGTTTTTAGCAAAAAACCGTGAT
321 CG-C-CAAAAATCATGCAAAACTGAGTCGGGGCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAA
* *
184074 GGTTAGTAAACGTTTTCGGCTAAAATTTTGAAAAAATTGACCCGAAAGTTTTT-CTCAATTTCTG
384 GGTTAGTACACGATTTCGGCTAAAATTTTGAAAAAATTGACCCGAAAGTTTTTCCTCAATTTCTG
*
184138 GCCAAATAGTTATAAAAATTATATAACTCAATGCCAAAAAGGTTGAAGGGTTTTCCACGCTTCTA
449 GCCAAATACTTATAAAAATTATATAACTCAATGCCAAAAAGGTTGAAGGGTTTTCCACGCTTCTA
* *
184203 ATATCATTTTTTAAATATATTTTTGAATATAATTTCTATTTAAATCGAAACAAGATTCAAATACT
514 ATATCATTTTTTAAATATTTTTTTGAAT-TAATTTCTATTTAAATCGAAACAAGATTCAGATACT
* * *
184268 CGTAAAATCACATACTTGAATCCAATGTGGAAGGGATTTGGCAGGATGAAAATAGATATTTCAAG
578 CGTAAAATCACATACTTGAATCCAATGTGGATGGGATTTGGCTGGATGAATATAGATATTTCAAG
* *
184333 GAGTCTGTGCGACAAAAATC
643 GAGTCTGGGCGACAAAAAAC
* * *
184353 ATGCGAAACTGAGTCGGAGTCTCGGAACGCGTTTTTAGGCAAAAACCGTGATGGTTAGTACACGA
1 ATGCGAAACTGAGTCGGGGTCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGA
* *
184418 TTTCAGCTAAAACTTTGCAAAAACTGATCTGAAAAAATTTTCCACAATTTTTGGCCACAATACTT
66 TTTCGGCTAAAACTTTGCAAAAACTGATCTGAAAAAATTTTCCTCAATTTTTGGCCACAATACTT
* * * *
184483 ATAAAAAAATATTAAATTCAACGCCAAAACGATGGAAGGATTTTTCACGTCTTT-AT-T-A--TC
131 ATAAAAATATA-T-AATTCAACGCCAAAACGATGGAAGGAGTTTTCACAT-TTTAATATCATTTT
* * *
184543 GT--TTTTTTTTTCAAATTTATTTCTCATTAAATTGAAACAAGATTCAGATGCTCGTTAAAA-AA
193 TTAATTTTTTTTTCAAATTTATTTCTCATTAAATCGAAACAAGATTCAGATACTCG-TAAAATAA
* * * * *
184605 AATCCTTAAATCCAATGTGGCTGCTATTTGATTAGATGAATATAGATATTCCAAGAAGTCTTAGC
257 AATACTTAAATCCAATGTGGATGCGATTTGACTAGATGAATATAGATATTCCAAGAAGTCTGAGC
*
184670 GCCAAAAATCATGCAAAACTGAGTCGAGGCCCCGGAACGCGTTTTTAGCCAAAAACCGT-AATGG
322 GCCAAAAATCATGCAAAACTGAGTCGGGGCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAA-GG
* * * * *
184734 TTAGTACAC-ATTTTTGGCTAAAATTTAGAAAACATTGACTCGAAAGGTTTTCCTCAATTTCTGG
386 TTAGTACACGA-TTTCGGCTAAAATTTTGAAAAAATTGACCCGAAAGTTTTTCCTCAATTTCTGG
* * * *
184798 CCAAATACTTATAAAAATTAT-TTACTTCAATGCCAAAAAGGTTGAAGGGCTTTCCACGCGTCAA
450 CCAAATACTTATAAAAATTATATAAC-TCAATGCCAAAAAGGTTGAAGGGTTTTCCACGCTTCTA
* * *
184862 ATATCATTTTTTAAATATTTTTTTTGAATTAAATTCCATTTAAATTGAAACAAGATTCAGATACT
514 ATATCATTTTTTAAATA-TTTTTTTGAATTAATTTCTATTTAAATCGAAACAAGATTCAGATACT
*
184927 CGTAAAATCACATACTTGAATCCAATGTGGATGGGATTTGGCCGGATGAATATAGATATTTCAAG
578 CGTAAAATCACATACTTGAATCCAATGTGGATGGGATTTGGCTGGATGAATATAGATATTTCAAG
184992 GAGTCTGGGCGA-AAAAAAC
643 GAGTCTGGGCGACAAAAAAC
* *
185011 ATGCGAAACAT-AG-CCGGGTCCTGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACG
1 ATGCGAAAC-TGAGTCGGGGTCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACG
* *
185074 ATTTCGGCTAAAACTTTGCTAAAACTGATCTGAAAAATTTTTCCTCAATTTTTGG-C-C---AC-
65 ATTTCGGCTAAAACTTTGCAAAAACTGATCTGAAAAAATTTTCCTCAATTTTTGGCCACAATACT
* * * * *
185133 -------------AA-T----GCCAAAATGGTTGAAGG-GCTTTTCAACGCTTCTAATATCATTT
130 TATAAAAATATATAATTCAACGCCAAAACGATGGAAGGAG-TTTTC-AC-ATTTTAATATCATTT
* * *
185179 TTTAAATATTTTTTT-GAATTAATTTCT-ATTTAAATCGAAACAAGATTCAGATACTCGTAAAAT
192 TTT-AATTTTTTTTTCAAATTTATTTCTCA-TTAAATCGAAACAAGATTCAGATACTCGTAAAAT
* * * * * * * * * *
185242 GACATACTTGAATCCAATGTGGATGGGATTTGGCTGGGTGGAGATAGATATTTCC-AGGAGTCTG
255 AAAATACTTAAATCCAATGTGGATGCGATTTGACTAGATGAATATAGATA-TTCCAAGAAGTCTG
* ** * * * * *
185306 GGCGATAAAAAACATGCGAAACTGAGTCGGGGTCCCGGAACGCGTTTTTAGCCAAAAACCGAGAT
319 AGCGCCAAAAATCATGCAAAACTGAGTCGGGGCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAA
** * * * * *** *
185371 GGTTAGTACACGATTTAAGCTAAAATTTTGCAAAAACTGATCGGAAAAAAATTTCCTCAATTTTT
384 GGTTAGTACACGATTTCGGCTAAAATTTTGAAAAAATTGACCCG-AAAGTTTTTCCTCAATTTCT
* * * * * * * * * *
185436 GGCCAGAATACTAATTAAAAAATAGAAAATTCAACGCC-AAAACGATGAAGGATTTTTCACG-TA
448 GGCCA-AATACTTA-TAAAAATTATATAACTCAATGCCAAAAAGGTTGAAGGGTTTTCCACGCT-
* * ** * * ** **
185499 TTTAATATCGTTTTTCT-TTTTTTTTTTTCAAATTTTTTTCCTCCTTAAATCGAAACAAGATTCA
510 TCTAATATCATTTTT-TAAATATTTTTTT-GAATTAATTT-CTATTTAAATCGAAACAAGATTCA
* * * * * * ** ** *
185563 GATGCTTGTTAAAA-CAAATCCTTAAATCCAATGTGGCTGCTATTTGATTAGATGAATATAGATA
572 GATACTCG-TAAAATCACATACTTGAATCCAATGTGGATGGGATTTGGCTGGATGAATATAGATA
* * ** * * *
185627 -TTCTAAGAATTCTTAGCGCCGAAAATC
636 TTTC-AAGGAGTCTGGGCGACAAAAAAC
* * * *
185654 ATGCAAAACTGAGTCGGGGCCCCGGAACGCGTTTTTAGCCAAAAATCGTGATGGTTAGTACCCGA
1 ATGCGAAACTGAGTCGGGGTCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGA
* * * * ** * *
185719 TTTCGTCTAAAATTTTGAAAAAATTGATCCT--AAAGTTTTTACTCAATTTCTGGCCA-AATACT
66 TTTCGGCTAAAACTTTGCAAAAACTGAT-CTGAAAAAATTTTCCTCAATTTTTGGCCACAATACT
* * * * * *
185781 TATAAAAATTATATAATTCAATGCCAAAAAGGTTGAAGG-GCTTTCCACGCTTTTAATATCATTT
130 TATAAAAA-TATATAATTCAACGCCAAAACGATGGAAGGAG-TTTTCAC-ATTTTAATATCATTT
* * * * * * *
185845 TTTAAATATTTTTTAAAAATAATTTCT-ATTTAAATCGAAACAAGATTCAGATACTTGTAAAATC
192 TTTAATTTTTTTTTCAAATTTATTTCTCA-TTAAATCGAAACAAGATTCAGATACTCGTAAAATA
* * * ** * * *
185909 ACATACTTGAATCCAATGTGGATGGGATTTTG-CCGGATGAATATAGATATTTCAAGGAGTCTGG
256 AAATACTTAAATCCAATGTGGATGCGA-TTTGACTAGATGAATATAGATATTCCAAGAAGTCTGA
* ** * * * * * *
185973 GAGATAAAAA-CATGCGAAACTGAGTCGAGGTCCTGGAATGCGTTTTTAGCCAAAAACCGTGATG
320 GCGCCAAAAATCATGCAAAACTGAGTCGGGGCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAAG
* * * * * *** ** *
186037 GTTAGTATACGATTTCAGCTAAAACTTTGCAAAAACTGATATGAATAAATTTTCCTCAATTTTTG
385 GTTAGTACACGATTTCGGCTAAAATTTTGAAAAAATTGACCCGAA-AGTTTTTCCTCAATTTCTG
* * * * * * * * * * *
186102 GCTACAATACTCATAAAAAAATATAAAATTCAACGCCAAAACGATGGAAGGATTTTTCACGTCTT
449 GCCA-AATACTTAT-AAAAATTATATAACTCAATGCCAAAAAGGTTGAAGGGTTTTCCACG-CTT
* * * * * *
186167 -TAATATCATTTTTCT-TATTTTTTTTTCAAATTTATTGCTCA-TTAAATCGAAACAAGATTTAG
511 CTAATATCATTTTT-TAAATATTTTTTT-GAATTAATTTCT-ATTTAAATCGAAACAAGATTCAG
* * * * * ** ** * *
186229 ATGCTCGTTAAAA--AAATCCTTAAATCCAATGTGGCTGCTATTTGATTAGATGAATGTAGATAT
573 ATACTCG-TAAAATCACATACTTGAATCCAATGTGGATGGGATTTGGCTGGATGAATATAGATAT
* * ** * *
186292 TCCAAGAAGTCTTAGCGCCAAAAATC
637 TTCAAGGAGTCTGGGCGACAAAAAAC
* * *
186318 ATGCAAAACTGAGTCGGGGCCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACCCGA
1 ATGCGAAACTGAGTCGGGGTCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGA
* * * * * **
186383 TTTCGGCTAAAATTTTGAAAAAATTGACCCG-AAAGTTTTTCCTCAATTTCTT-GCCA-AATACT
66 TTTCGGCTAAAACTTTGCAAAAACTGATCTGAAAAAATTTTCCTCAATTT-TTGGCCACAATACT
* * * * * * * *
186445 TATAAAAATTAAATAATTCAATGACAAAAAGATTGAAGG-GCCTTCCACGCTTTTAATATCATTT
130 TATAAAAA-TATATAATTCAACGCCAAAACGATGGAAGGAG-TTTTCAC-ATTTTAATATCATTT
* * * *
186509 TATAAATATTTTTTT-GAATTAATTTCT-ATTTAAATCGAAACAAGATTCAGATACTCGTAAAAT
192 T-TTAATTTTTTTTTCAAATTTATTTCTCA-TTAAATCGAAACAAGATTCAGATACTCGTAAAAT
* * * * * *
186572 AACATACTTGAATCCAATGTGGATGGGATTTTG-CTGGAT-AAGTATAGATATTTCAAGGAGTCT
255 AAAATACTTAAATCCAATGTGGATGCGA-TTTGACTAGATGAA-TATAGATATTCCAAGAAGTCT
* * * * * * ** **
186635 GGGCGACAAAAAACATGCGAAACTGAGTCGGTGTCCCGGAACAAGTTTTTAGCCAAAAATTGTG-
318 GAGCGCCAAAAATCATGCAAAACTGAGTCGGGGCCCCGGAACGCGTTTTTAGCCAAAAACCGTGA
* * * *
186699 A--TAACGTACACGATTTCGGCTAAAATTTTGAAAAAATTGACTCAAAAGTTTTTCCTCAATTTT
383 AGGTTA-GTACACGATTTCGGCTAAAATTTTGAAAAAATTGACCCGAAAGTTTTTCCTCAATTTC
* * *
186762 TGG-C-----C----------------A--CAATGCCAAAATGGTTGAAGGGCTTTTCAACGTTT
447 TGGCCAAATACTTATAAAAATTATATAACTCAATGCCAAAAAGGTTGAAGGG-TTTTCCACGCTT
*
186803 CTAATATCATTTTTTAAATATTTTTTTGAATTAA--TCTATTTAAATCGAAACAAGATTCATATA
511 CTAATATCATTTTTTAAATATTTTTTTGAATTAATTTCTATTTAAATCGAAACAAGATTCAGATA
* ** *
186866 CTCGTAAAAT-AAATACTTGAATCCAATGTGGATGGGATTTTACTGGATGAAAATAGATATTTCA
576 CTCGTAAAATCACATACTTGAATCCAATGTGGATGGGATTTGGCTGGATGAATATAGATATTTCA
186930 AGGAGTCTGGGCGAC-AAAAAC
641 AGGAGTCTGGGCGACAAAAAAC
186951 AATGCGAAACTGAGTCGGGGT
1 -ATGCGAAACTGAGTCGGGGT
186972 TCC
Statistics
Matches: 4460, Mismatches: 653, Indels: 421
0.81 0.12 0.08
Matches are distributed among these distances:
631 19 0.00
632 4 0.00
633 14 0.00
634 100 0.02
635 2 0.00
636 27 0.01
637 31 0.01
638 7 0.00
639 167 0.04
640 42 0.01
641 47 0.01
642 93 0.02
643 40 0.01
644 70 0.02
645 2 0.00
647 2 0.00
652 2 0.00
655 2 0.00
656 203 0.05
657 172 0.04
658 115 0.03
659 245 0.05
660 137 0.03
661 157 0.04
662 71 0.02
663 276 0.06
664 424 0.10
665 284 0.06
666 390 0.09
667 154 0.03
668 69 0.02
669 516 0.12
670 11 0.00
672 1 0.00
674 6 0.00
675 5 0.00
677 1 0.00
678 2 0.00
679 3 0.00
680 7 0.00
681 7 0.00
682 3 0.00
683 2 0.00
684 1 0.00
686 5 0.00
687 6 0.00
689 1 0.00
690 1 0.00
697 16 0.00
698 36 0.01
699 197 0.04
700 7 0.00
702 1 0.00
703 8 0.00
704 139 0.03
705 34 0.01
706 76 0.02
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.32
Consensus pattern (662 bp):
ATGCGAAACTGAGTCGGGGTCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGA
TTTCGGCTAAAACTTTGCAAAAACTGATCTGAAAAAATTTTCCTCAATTTTTGGCCACAATACTT
ATAAAAATATATAATTCAACGCCAAAACGATGGAAGGAGTTTTCACATTTTAATATCATTTTTTA
ATTTTTTTTTCAAATTTATTTCTCATTAAATCGAAACAAGATTCAGATACTCGTAAAATAAAATA
CTTAAATCCAATGTGGATGCGATTTGACTAGATGAATATAGATATTCCAAGAAGTCTGAGCGCCA
AAAATCATGCAAAACTGAGTCGGGGCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAAGGTTAGT
ACACGATTTCGGCTAAAATTTTGAAAAAATTGACCCGAAAGTTTTTCCTCAATTTCTGGCCAAAT
ACTTATAAAAATTATATAACTCAATGCCAAAAAGGTTGAAGGGTTTTCCACGCTTCTAATATCAT
TTTTTAAATATTTTTTTGAATTAATTTCTATTTAAATCGAAACAAGATTCAGATACTCGTAAAAT
CACATACTTGAATCCAATGTGGATGGGATTTGGCTGGATGAATATAGATATTTCAAGGAGTCTGG
GCGACAAAAAAC
Done.