Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019137.1 Corchorus olitorius cultivar O-4 contig19170, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5507
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.32


Found at i:3908 original size:12 final size:12

Alignment explanation


    Indices: 3891--3915  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

       3881 CTTGGATCAT

                        
       3891 GAATTAAGCTTC
          1 GAATTAAGCTTC

                        
       3903 GAATTAAGCTTC
          1 GAATTAAGCTTC

             
       3915 G
          1 G

       3916 CCAGGGTCGA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32


Consensus pattern (12 bp):   
GAATTAAGCTTC
Done.