Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019148.1 Corchorus olitorius cultivar O-4 contig19181, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40574

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
424--474
24
2.1
25
85
3
68
17
5
5
70
1.28
12000--12075
37
2.0
38
92
2
127
46
9
1
43
1.44
12942--13109
22
7.7
22
74
4
106
36
15
14
33
1.88
13296--13468
22
7.9
22
69
10
95
34
15
11
38
1.83
13298--13448
44
3.4
44
76
10
130
35
13
11
39
1.81
13426--13509
44
1.9
44
82
0
105
33
15
13
38
1.86
20351--20385
6
5.7
6
96
3
61
37
14
0
48
1.44
21506--21575
36
1.9
36
91
0
113
60
8
10
21
1.55
24696--25088
201
1.9
203
93
1
585
35
10
8
45
1.69
36881--36963
30
3.0
27
84
10
121
50
3
3
42
1.37
38985--39014
2
15.0
2
100
0
60
50
0
0
50
1.00

Tables:   1

The End!