Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019153.1 Corchorus olitorius cultivar O-4 contig19186, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60683

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37--70
15
2.3
15
84
0
50
82
0
14
0
0.64
6199--6271
31
2.4
31
88
0
101
34
15
10
39
1.82
8975--9095
22
5.5
22
75
8
113
32
8
17
42
1.79
9108--9316
22
9.3
22
72
13
122
39
10
17
33
1.83
9364--9421
22
2.7
22
83
2
73
37
13
10
37
1.79
9585--9661
21
3.6
22
77
3
77
41
7
16
33
1.78
9579--9900
43
7.5
44
71
17
160
36
7
18
37
1.79
9693--10090
22
18.5
22
69
14
133
35
9
17
37
1.83
9693--9920
63
3.6
63
71
19
172
36
7
17
37
1.80
9693--9921
85
2.7
84
78
9
225
37
7
17
37
1.79
9885--9967
43
1.9
43
82
7
105
38
9
15
36
1.81
9737--9963
107
2.1
104
79
8
235
37
8
18
35
1.82
10176--10219
19
2.2
20
88
12
63
43
6
11
38
1.67
12909--12947
20
2.0
20
94
0
69
46
10
20
23
1.81
12969--13068
43
2.3
44
82
1
112
37
8
11
44
1.69
13012--13068
22
2.6
22
80
5
71
38
10
10
40
1.74
14794--14899
51
2.1
50
84
8
135
20
23
13
42
1.87
15634--15681
22
2.3
21
78
7
53
12
50
0
37
1.41
17319--17386
29
2.3
31
87
5
95
41
14
22
22
1.90
17469--17508
16
2.6
16
88
4
55
15
7
0
77
0.98
19569--19872
104
2.9
97
82
12
356
25
14
26
32
1.95
20006--20096
45
2.0
45
97
0
173
38
23
18
19
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23594--23626
9
3.3
10
91
8
50
9
3
6
81
0.95
24499--24885
81
4.8
81
92
1
602
22
17
25
33
1.96
25146--25206
29
2.0
30
87
6
88
37
8
18
36
1.80
27185--27217
13
2.5
13
90
0
57
6
6
12
75
1.16
29096--29125
12
2.4
13
88
11
53
66
13
6
13
1.43
30416--30456
19
2.2
19
86
4
57
31
21
7
39
1.81
33914--33973
29
2.0
30
87
6
86
38
8
18
35
1.81
40719--40754
18
2.0
18
100
0
72
38
16
22
22
1.93
42257--42297
16
2.8
14
82
13
55
26
14
7
51
1.69
51999--52109
21
5.3
20
70
16
82
25
8
31
35
1.85
52000--52182
42
4.4
41
78
8
199
28
7
31
32
1.84
51995--52183
84
2.2
84
90
0
288
28
7
31
33
1.85
55241--55293
18
2.7
20
82
8
65
26
0
22
50
1.49
55241--55293
10
5.4
10
82
11
65
26
0
22
50
1.49
57604--57755
76
2.0
76
81
7
175
17
28
28
25
1.97

Tables:   1

The End!