Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019156.1 Corchorus olitorius cultivar O-4 contig19189, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 33045
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33


Found at i:20252 original size:7 final size:7

Alignment explanation


    Indices: 20240--20274  Score: 61
    Period size: 7  Copynumber: 5.0  Consensus size: 7

      20230 TTTTTTTACC

                   
      20240 GTTGGTA
          1 GTTGGTA

                   
      20247 GTTGGTA
          1 GTTGGTA

                   
      20254 GTTGGTA
          1 GTTGGTA

                   
      20261 GTTGGTA
          1 GTTGGTA

            *      
      20268 CTTGGTA
          1 GTTGGTA

      20275 ATAGGTTCGC


Statistics
Matches: 27,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   7   27  1.00

ACGTcount: A:0.14, C:0.03, G:0.40, T:0.43


Consensus pattern (7 bp):   
GTTGGTA

Found at i:27903 original size:5 final size:5

Alignment explanation


    Indices: 27893--27922  Score: 60
    Period size: 5  Copynumber: 6.0  Consensus size: 5

      27883 CATTTTAAAT

                                               
      27893 TATAA TATAA TATAA TATAA TATAA TATAA
          1 TATAA TATAA TATAA TATAA TATAA TATAA

      27923 CATATTTATA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   25  1.00

ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40


Consensus pattern (5 bp):   
TATAA

Done.