Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019157.1 Corchorus olitorius cultivar O-4 contig19190, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3384
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.32


Found at i:787 original size:30 final size:30

Alignment explanation


    Indices: 752--822  Score: 115
    Period size: 30  Copynumber: 2.4  Consensus size: 30

        742 TGTCACGTCA

                              *           
        752 GCATGCCACGTGGAATTTTCATCCTATGTG
          1 GCATGCCACGTGGAATTTGCATCCTATGTG

                  * *                     
        782 GCATGCTATGTGGAATTTGCATCCTATGTG
          1 GCATGCCACGTGGAATTTGCATCCTATGTG

                       
        812 GCATGCCACGT
          1 GCATGCCACGT

        823 CAGCACCATA


Statistics
Matches: 36,  Mismatches: 5, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  30   36  1.00

ACGTcount: A:0.20, C:0.23, G:0.25, T:0.32


Consensus pattern (30 bp):   
GCATGCCACGTGGAATTTGCATCCTATGTG
Done.