Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019160.1 Corchorus olitorius cultivar O-4 contig19193, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56553

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1170--1196
13
2.1
13
100
0
54
48
7
29
14
1.71
4267--4314
20
2.3
21
80
13
64
58
0
2
39
1.10
6727--6755
2
14.5
2
100
0
58
48
0
0
51
1.00
13867--13905
20
2.0
20
94
0
69
38
5
28
28
1.78
15436--15482
25
1.9
24
95
4
85
29
6
8
55
1.55
16275--16344
36
1.9
36
91
0
113
60
8
10
21
1.55
19566--19608
20
2.2
20
100
0
86
41
4
9
44
1.57
23658--23839
99
1.8
99
92
0
310
20
17
33
29
1.95
23779--23900
65
1.9
65
96
0
226
23
18
30
27
1.98
23845--24101
83
3.0
85
90
4
401
27
18
31
22
1.97
30348--30383
17
2.0
19
89
10
58
61
5
22
11
1.50
46426--46474
25
2.0
25
100
0
98
12
32
20
34
1.90
46471--46512
21
2.0
21
86
9
59
47
35
0
16
1.47

Tables:   1

The End!