Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019161.1 Corchorus olitorius cultivar O-4 contig19194, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 649

Length: 1082
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36


Found at i:549 original size:58 final size:58

Alignment explanation


    Indices: 450--559  Score: 150
    Period size: 58  Copynumber: 1.9  Consensus size: 58

        440 ATTAATCAAA

                                                          *           
        450 TATCAAGTGACATGTTCTTTATAAGATGCATAAAAAAAGACGTTTTCGGACCAAAACT
          1 TATCAAGTGACATGTTCTTTATAAGATGCATAAAAAAAGACGTTTTAGGACCAAAACT

                *         *  *     *      *                      
        508 TATCGAGTGACATATTTTTTTATTAGATGCCT-AAAAAAGACGTTTTAGGACC
          1 TATCAAGTGACAT-GTTCTTTATAAGATGCATAAAAAAAGACGTTTTAGGACC

        560 GAGGCATGAT


Statistics
Matches: 45,  Mismatches: 6, Indels: 2
        0.85            0.11        0.04

Matches are distributed among these distances:
  58   31  0.69
  59   14  0.31

ACGTcount: A:0.36, C:0.15, G:0.16, T:0.33


Consensus pattern (58 bp):   
TATCAAGTGACATGTTCTTTATAAGATGCATAAAAAAAGACGTTTTAGGACCAAAACT
Done.