Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019163.1 Corchorus olitorius cultivar O-4 contig19196, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31322

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105--214
58
1.9
58
84
3
150
36
14
16
32
1.89
1493--1562
36
1.9
36
91
0
113
21
10
8
60
1.55
2091--2485
204
1.9
203
93
2
677
45
8
10
35
1.70
2601--2680
38
2.0
40
90
4
128
37
3
8
50
1.52
7814--7861
21
2.2
22
85
10
64
33
8
16
41
1.78
8277--8310
2
17.0
2
88
11
52
47
2
0
50
1.16
9890--9987
30
3.3
30
92
0
151
26
18
33
21
1.96
14141--14309
84
2.0
85
92
1
286
31
23
10
34
1.88
19021--19071
17
3.1
16
78
18
59
35
17
21
25
1.95
20683--21188
22
22.6
21
68
16
159
35
16
10
37
1.83
20726--20897
65
2.6
64
76
6
157
38
17
9
34
1.83
20938--21105
70
2.5
66
77
9
149
32
19
8
40
1.81
21873--21906
2
17.0
2
100
0
68
50
50
0
0
1.00
21906--21940
2
17.5
2
87
0
52
45
0
5
48
1.26
24682--24830
74
2.0
74
98
0
289
18
10
20
51
1.74
28015--28057
20
2.2
20
86
0
59
13
23
18
44
1.86

Tables:   1

The End!