Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019167.1 Corchorus olitorius cultivar O-4 contig19200, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7939
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35


Found at i:647 original size:2 final size:2

Alignment explanation


    Indices: 640--665  Score: 52
    Period size: 2  Copynumber: 13.0  Consensus size: 2

        630 TTTGGCATTC

                                                  
        640 AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT

        666 GGCCTTAATT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   24  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Found at i:4980 original size:28 final size:28

Alignment explanation


    Indices: 4937--4992  Score: 94
    Period size: 28  Copynumber: 2.0  Consensus size: 28

       4927 ATTCAACCCA

                       *                
       4937 AAAAAAAAGAAGCCCAACACAACCTAAT
          1 AAAAAAAAGAAACCCAACACAACCTAAT

                              *         
       4965 AAAAAAAAGAAACCCAACCCAACCTAAT
          1 AAAAAAAAGAAACCCAACACAACCTAAT

       4993 TACCTAATCC


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  28   26  1.00

ACGTcount: A:0.61, C:0.27, G:0.05, T:0.07


Consensus pattern (28 bp):   
AAAAAAAAGAAACCCAACACAACCTAAT
Done.