Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019169.1 Corchorus olitorius cultivar O-4 contig19202, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26341

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5355--5393
21
2.0
21
90
10
64
48
5
15
30
1.66
6337--6385
13
3.9
13
76
17
50
28
2
12
57
1.46
7624--7682
22
2.7
23
76
12
70
38
10
11
38
1.76
7619--7698
22
3.6
22
73
6
63
35
12
16
36
1.86
7723--7772
21
2.3
21
79
3
55
32
14
16
38
1.88
7721--7954
22
10.6
22
73
8
127
38
9
14
37
1.79
7721--7945
90
2.6
87
78
8
206
39
9
14
36
1.79
7745--7927
43
4.2
43
82
6
172
38
10
14
36
1.81
8058--8115
18
3.0
18
87
10
71
34
10
15
39
1.81
8039--8130
22
4.4
20
78
14
80
36
13
14
35
1.84
8184--8287
22
4.8
21
73
13
86
37
12
13
36
1.83
8231--8295
22
3.0
22
74
0
67
35
16
12
35
1.87
14906--15010
42
2.4
43
81
6
115
39
20
11
29
1.87
14864--15007
22
6.7
22
78
7
125
40
18
11
29
1.86
15013--15056
19
2.3
19
84
4
52
40
20
9
29
1.83
15641--15683
22
2.0
22
90
0
68
30
11
18
39
1.86
24312--24399
16
5.6
16
69
1
70
9
12
36
42
1.75
24313--24393
32
2.5
32
81
0
99
9
12
35
41
1.76
25705--25784
41
1.9
42
94
2
144
55
20
5
20
1.62

Tables:   1

The End!